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Characterization of microbiomic and geochemical compositions across the photosynthetic fringe

Hot spring outflow channels provide geochemical gradients that are reflected in microbial community compositions. In many hot spring outflows, there is a distinct visual demarcation as the community transitions from predominantly chemotrophs to having visible pigments from phototrophs. It has been h...

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Autores principales: Weeks, Katelyn, Trembath-Reichert, Elizabeth, Boyer, Grayson, Fecteau, Kristopher, Howells, Alta, De Martini, Francesca, Gile, Gillian H., Shock, Everett L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178925/
https://www.ncbi.nlm.nih.gov/pubmed/37187542
http://dx.doi.org/10.3389/fmicb.2023.1176606
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author Weeks, Katelyn
Trembath-Reichert, Elizabeth
Boyer, Grayson
Fecteau, Kristopher
Howells, Alta
De Martini, Francesca
Gile, Gillian H.
Shock, Everett L.
author_facet Weeks, Katelyn
Trembath-Reichert, Elizabeth
Boyer, Grayson
Fecteau, Kristopher
Howells, Alta
De Martini, Francesca
Gile, Gillian H.
Shock, Everett L.
author_sort Weeks, Katelyn
collection PubMed
description Hot spring outflow channels provide geochemical gradients that are reflected in microbial community compositions. In many hot spring outflows, there is a distinct visual demarcation as the community transitions from predominantly chemotrophs to having visible pigments from phototrophs. It has been hypothesized that this transition to phototrophy, known as the photosynthetic fringe, is a result of the pH, temperature, and/or sulfide concentration gradients in the hot spring outflows. Here, we explicitly evaluated the predictive capability of geochemistry in determining the location of the photosynthetic fringe in hot spring outflows. A total of 46 samples were taken from 12 hot spring outflows in Yellowstone National Park that spanned pH values from 1.9 to 9.0 and temperatures from 28.9 to 92.2°C. Sampling locations were selected to be equidistant in geochemical space above and below the photosynthetic fringe based on linear discriminant analysis. Although pH, temperature, and total sulfide concentrations have all previously been cited as determining factors for microbial community composition, total sulfide did not correlate with microbial community composition with statistical significance in non-metric multidimensional scaling. In contrast, pH, temperature, ammonia, dissolved organic carbon, dissolved inorganic carbon, and dissolved oxygen did correlate with the microbial community composition with statistical significance. Additionally, there was observed statistical significance between beta diversity and the relative position to the photosynthetic fringe with sites above the photosynthetic fringe being significantly different from those at or below the photosynthetic fringe according to canonical correspondence analysis. However, in combination, the geochemical parameters considered in this study only accounted for 35% of the variation in microbial community composition determined by redundancy analysis. In co-occurrence network analyses, each clique correlated with either pH and/or temperature, whereas sulfide concentrations only correlated with individual nodes. These results indicate that there is a complex interplay between geochemical variables and the position of the photosynthetic fringe that cannot be fully explained by statistical correlations with the individual geochemical variables included in this study.
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spelling pubmed-101789252023-05-13 Characterization of microbiomic and geochemical compositions across the photosynthetic fringe Weeks, Katelyn Trembath-Reichert, Elizabeth Boyer, Grayson Fecteau, Kristopher Howells, Alta De Martini, Francesca Gile, Gillian H. Shock, Everett L. Front Microbiol Microbiology Hot spring outflow channels provide geochemical gradients that are reflected in microbial community compositions. In many hot spring outflows, there is a distinct visual demarcation as the community transitions from predominantly chemotrophs to having visible pigments from phototrophs. It has been hypothesized that this transition to phototrophy, known as the photosynthetic fringe, is a result of the pH, temperature, and/or sulfide concentration gradients in the hot spring outflows. Here, we explicitly evaluated the predictive capability of geochemistry in determining the location of the photosynthetic fringe in hot spring outflows. A total of 46 samples were taken from 12 hot spring outflows in Yellowstone National Park that spanned pH values from 1.9 to 9.0 and temperatures from 28.9 to 92.2°C. Sampling locations were selected to be equidistant in geochemical space above and below the photosynthetic fringe based on linear discriminant analysis. Although pH, temperature, and total sulfide concentrations have all previously been cited as determining factors for microbial community composition, total sulfide did not correlate with microbial community composition with statistical significance in non-metric multidimensional scaling. In contrast, pH, temperature, ammonia, dissolved organic carbon, dissolved inorganic carbon, and dissolved oxygen did correlate with the microbial community composition with statistical significance. Additionally, there was observed statistical significance between beta diversity and the relative position to the photosynthetic fringe with sites above the photosynthetic fringe being significantly different from those at or below the photosynthetic fringe according to canonical correspondence analysis. However, in combination, the geochemical parameters considered in this study only accounted for 35% of the variation in microbial community composition determined by redundancy analysis. In co-occurrence network analyses, each clique correlated with either pH and/or temperature, whereas sulfide concentrations only correlated with individual nodes. These results indicate that there is a complex interplay between geochemical variables and the position of the photosynthetic fringe that cannot be fully explained by statistical correlations with the individual geochemical variables included in this study. Frontiers Media S.A. 2023-04-28 /pmc/articles/PMC10178925/ /pubmed/37187542 http://dx.doi.org/10.3389/fmicb.2023.1176606 Text en Copyright © 2023 Weeks, Trembath-Reichert, Boyer, Fecteau, Howells, De Martini, Gile and Shock. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Weeks, Katelyn
Trembath-Reichert, Elizabeth
Boyer, Grayson
Fecteau, Kristopher
Howells, Alta
De Martini, Francesca
Gile, Gillian H.
Shock, Everett L.
Characterization of microbiomic and geochemical compositions across the photosynthetic fringe
title Characterization of microbiomic and geochemical compositions across the photosynthetic fringe
title_full Characterization of microbiomic and geochemical compositions across the photosynthetic fringe
title_fullStr Characterization of microbiomic and geochemical compositions across the photosynthetic fringe
title_full_unstemmed Characterization of microbiomic and geochemical compositions across the photosynthetic fringe
title_short Characterization of microbiomic and geochemical compositions across the photosynthetic fringe
title_sort characterization of microbiomic and geochemical compositions across the photosynthetic fringe
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178925/
https://www.ncbi.nlm.nih.gov/pubmed/37187542
http://dx.doi.org/10.3389/fmicb.2023.1176606
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