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Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia
Dementia is a progressive and debilitating neurological disease that affects millions of people worldwide. Identifying the minimally invasive biomarkers associated with dementia that could provide insights into the disease pathogenesis, improve early diagnosis, and facilitate the development of effe...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10179172/ https://www.ncbi.nlm.nih.gov/pubmed/37175824 http://dx.doi.org/10.3390/ijms24098117 |
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author | Ehtewish, Hanan Mesleh, Areej Ponirakis, Georgios De la Fuente, Alberto Parray, Aijaz Bensmail, Ilham Abdesselem, Houari Ramadan, Marwan Khan, Shafi Chandran, Mani Ayadathil, Raheem Elsotouhy, Ahmed Own, Ahmed Al Hamad, Hanadi Abdelalim, Essam M. Decock, Julie Alajez, Nehad M. Albagha, Omar Thornalley, Paul J. Arredouani, Abdelilah Malik, Rayaz A. El-Agnaf, Omar M. A. |
author_facet | Ehtewish, Hanan Mesleh, Areej Ponirakis, Georgios De la Fuente, Alberto Parray, Aijaz Bensmail, Ilham Abdesselem, Houari Ramadan, Marwan Khan, Shafi Chandran, Mani Ayadathil, Raheem Elsotouhy, Ahmed Own, Ahmed Al Hamad, Hanadi Abdelalim, Essam M. Decock, Julie Alajez, Nehad M. Albagha, Omar Thornalley, Paul J. Arredouani, Abdelilah Malik, Rayaz A. El-Agnaf, Omar M. A. |
author_sort | Ehtewish, Hanan |
collection | PubMed |
description | Dementia is a progressive and debilitating neurological disease that affects millions of people worldwide. Identifying the minimally invasive biomarkers associated with dementia that could provide insights into the disease pathogenesis, improve early diagnosis, and facilitate the development of effective treatments is pressing. Proteomic studies have emerged as a promising approach for identifying the protein biomarkers associated with dementia. This pilot study aimed to investigate the plasma proteome profile and identify a panel of various protein biomarkers for dementia. We used a high-throughput proximity extension immunoassay to quantify 1090 proteins in 122 participants (22 with dementia, 64 with mild cognitive impairment (MCI), and 36 controls with normal cognitive function). Limma-based differential expression analysis reported the dysregulation of 61 proteins in the plasma of those with dementia compared with controls, and machine learning algorithms identified 17 stable diagnostic biomarkers that differentiated individuals with AUC = 0.98 ± 0.02. There was also the dysregulation of 153 plasma proteins in individuals with dementia compared with those with MCI, and machine learning algorithms identified 8 biomarkers that classified dementia from MCI with an AUC of 0.87 ± 0.07. Moreover, multiple proteins selected in both diagnostic panels such as NEFL, IL17D, WNT9A, and PGF were negatively correlated with cognitive performance, with a correlation coefficient (r(2)) ≤ −0.47. Gene Ontology (GO) and pathway analysis of dementia-associated proteins implicated immune response, vascular injury, and extracellular matrix organization pathways in dementia pathogenesis. In conclusion, the combination of high-throughput proteomics and machine learning enabled us to identify a blood-based protein signature capable of potentially differentiating dementia from MCI and cognitively normal controls. Further research is required to validate these biomarkers and investigate the potential underlying mechanisms for the development of dementia. |
format | Online Article Text |
id | pubmed-10179172 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101791722023-05-13 Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia Ehtewish, Hanan Mesleh, Areej Ponirakis, Georgios De la Fuente, Alberto Parray, Aijaz Bensmail, Ilham Abdesselem, Houari Ramadan, Marwan Khan, Shafi Chandran, Mani Ayadathil, Raheem Elsotouhy, Ahmed Own, Ahmed Al Hamad, Hanadi Abdelalim, Essam M. Decock, Julie Alajez, Nehad M. Albagha, Omar Thornalley, Paul J. Arredouani, Abdelilah Malik, Rayaz A. El-Agnaf, Omar M. A. Int J Mol Sci Article Dementia is a progressive and debilitating neurological disease that affects millions of people worldwide. Identifying the minimally invasive biomarkers associated with dementia that could provide insights into the disease pathogenesis, improve early diagnosis, and facilitate the development of effective treatments is pressing. Proteomic studies have emerged as a promising approach for identifying the protein biomarkers associated with dementia. This pilot study aimed to investigate the plasma proteome profile and identify a panel of various protein biomarkers for dementia. We used a high-throughput proximity extension immunoassay to quantify 1090 proteins in 122 participants (22 with dementia, 64 with mild cognitive impairment (MCI), and 36 controls with normal cognitive function). Limma-based differential expression analysis reported the dysregulation of 61 proteins in the plasma of those with dementia compared with controls, and machine learning algorithms identified 17 stable diagnostic biomarkers that differentiated individuals with AUC = 0.98 ± 0.02. There was also the dysregulation of 153 plasma proteins in individuals with dementia compared with those with MCI, and machine learning algorithms identified 8 biomarkers that classified dementia from MCI with an AUC of 0.87 ± 0.07. Moreover, multiple proteins selected in both diagnostic panels such as NEFL, IL17D, WNT9A, and PGF were negatively correlated with cognitive performance, with a correlation coefficient (r(2)) ≤ −0.47. Gene Ontology (GO) and pathway analysis of dementia-associated proteins implicated immune response, vascular injury, and extracellular matrix organization pathways in dementia pathogenesis. In conclusion, the combination of high-throughput proteomics and machine learning enabled us to identify a blood-based protein signature capable of potentially differentiating dementia from MCI and cognitively normal controls. Further research is required to validate these biomarkers and investigate the potential underlying mechanisms for the development of dementia. MDPI 2023-05-01 /pmc/articles/PMC10179172/ /pubmed/37175824 http://dx.doi.org/10.3390/ijms24098117 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ehtewish, Hanan Mesleh, Areej Ponirakis, Georgios De la Fuente, Alberto Parray, Aijaz Bensmail, Ilham Abdesselem, Houari Ramadan, Marwan Khan, Shafi Chandran, Mani Ayadathil, Raheem Elsotouhy, Ahmed Own, Ahmed Al Hamad, Hanadi Abdelalim, Essam M. Decock, Julie Alajez, Nehad M. Albagha, Omar Thornalley, Paul J. Arredouani, Abdelilah Malik, Rayaz A. El-Agnaf, Omar M. A. Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia |
title | Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia |
title_full | Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia |
title_fullStr | Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia |
title_full_unstemmed | Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia |
title_short | Blood-Based Proteomic Profiling Identifies Potential Biomarker Candidates and Pathogenic Pathways in Dementia |
title_sort | blood-based proteomic profiling identifies potential biomarker candidates and pathogenic pathways in dementia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10179172/ https://www.ncbi.nlm.nih.gov/pubmed/37175824 http://dx.doi.org/10.3390/ijms24098117 |
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