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Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation

OBJECTIVES: To develop and test a Retina U-Net algorithm for the detection of primary lung tumors and associated metastases of all stages on FDG-PET/CT. METHODS: A data set consisting of 364 FDG-PET/CTs of patients with histologically confirmed lung cancer was used for algorithm development and inte...

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Autores principales: Weikert, T., Jaeger, P. F., Yang, S., Baumgartner, M., Breit, H. C., Winkel, D. J., Sommer, G., Stieltjes, B., Thaiss, W., Bremerich, J., Maier-Hein, K. H., Sauter, A. W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10182147/
https://www.ncbi.nlm.nih.gov/pubmed/36625882
http://dx.doi.org/10.1007/s00330-022-09332-y
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author Weikert, T.
Jaeger, P. F.
Yang, S.
Baumgartner, M.
Breit, H. C.
Winkel, D. J.
Sommer, G.
Stieltjes, B.
Thaiss, W.
Bremerich, J.
Maier-Hein, K. H.
Sauter, A. W.
author_facet Weikert, T.
Jaeger, P. F.
Yang, S.
Baumgartner, M.
Breit, H. C.
Winkel, D. J.
Sommer, G.
Stieltjes, B.
Thaiss, W.
Bremerich, J.
Maier-Hein, K. H.
Sauter, A. W.
author_sort Weikert, T.
collection PubMed
description OBJECTIVES: To develop and test a Retina U-Net algorithm for the detection of primary lung tumors and associated metastases of all stages on FDG-PET/CT. METHODS: A data set consisting of 364 FDG-PET/CTs of patients with histologically confirmed lung cancer was used for algorithm development and internal testing. The data set comprised tumors of all stages. All lung tumors (T), lymphatic metastases (N), and distant metastases (M) were manually segmented as 3D volumes using whole-body PET/CT series. The data set was split into a training (n = 216), validation (n = 74), and internal test data set (n = 74). Detection performance for all lesion types at multiple classifier thresholds was evaluated and false-positive-findings-per-case (FP/c) calculated. Next, detected lesions were assigned to categories T, N, or M using an automated anatomical region segmentation. Furthermore, reasons for FPs were visually assessed and analyzed. Finally, performance was tested on 20 PET/CTs from another institution. RESULTS: Sensitivity for T lesions was 86.2% (95% CI: 77.2–92.7) at a FP/c of 2.0 on the internal test set. The anatomical correlate to most FPs was the physiological activity of bone marrow (16.8%). TNM categorization based on the anatomical region approach was correct in 94.3% of lesions. Performance on the external test set confirmed the good performance of the algorithm (overall detection rate = 88.8% (95% CI: 82.5–93.5%) and FP/c = 2.7). CONCLUSIONS: Retina U-Nets are a valuable tool for tumor detection tasks on PET/CT and can form the backbone of reading assistance tools in this field. FPs have anatomical correlates that can lead the way to further algorithm improvements. The code is publicly available. KEY POINTS: • Detection of malignant lesions in PET/CT with Retina U-Net is feasible. • All false-positive findings had anatomical correlates, physiological bone marrow activity being the most prevalent. • Retina U-Nets can build the backbone for tools assisting imaging professionals in lung tumor staging. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00330-022-09332-y.
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spelling pubmed-101821472023-05-14 Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation Weikert, T. Jaeger, P. F. Yang, S. Baumgartner, M. Breit, H. C. Winkel, D. J. Sommer, G. Stieltjes, B. Thaiss, W. Bremerich, J. Maier-Hein, K. H. Sauter, A. W. Eur Radiol Imaging Informatics and Artificial Intelligence OBJECTIVES: To develop and test a Retina U-Net algorithm for the detection of primary lung tumors and associated metastases of all stages on FDG-PET/CT. METHODS: A data set consisting of 364 FDG-PET/CTs of patients with histologically confirmed lung cancer was used for algorithm development and internal testing. The data set comprised tumors of all stages. All lung tumors (T), lymphatic metastases (N), and distant metastases (M) were manually segmented as 3D volumes using whole-body PET/CT series. The data set was split into a training (n = 216), validation (n = 74), and internal test data set (n = 74). Detection performance for all lesion types at multiple classifier thresholds was evaluated and false-positive-findings-per-case (FP/c) calculated. Next, detected lesions were assigned to categories T, N, or M using an automated anatomical region segmentation. Furthermore, reasons for FPs were visually assessed and analyzed. Finally, performance was tested on 20 PET/CTs from another institution. RESULTS: Sensitivity for T lesions was 86.2% (95% CI: 77.2–92.7) at a FP/c of 2.0 on the internal test set. The anatomical correlate to most FPs was the physiological activity of bone marrow (16.8%). TNM categorization based on the anatomical region approach was correct in 94.3% of lesions. Performance on the external test set confirmed the good performance of the algorithm (overall detection rate = 88.8% (95% CI: 82.5–93.5%) and FP/c = 2.7). CONCLUSIONS: Retina U-Nets are a valuable tool for tumor detection tasks on PET/CT and can form the backbone of reading assistance tools in this field. FPs have anatomical correlates that can lead the way to further algorithm improvements. The code is publicly available. KEY POINTS: • Detection of malignant lesions in PET/CT with Retina U-Net is feasible. • All false-positive findings had anatomical correlates, physiological bone marrow activity being the most prevalent. • Retina U-Nets can build the backbone for tools assisting imaging professionals in lung tumor staging. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00330-022-09332-y. Springer Berlin Heidelberg 2023-01-10 2023 /pmc/articles/PMC10182147/ /pubmed/36625882 http://dx.doi.org/10.1007/s00330-022-09332-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Imaging Informatics and Artificial Intelligence
Weikert, T.
Jaeger, P. F.
Yang, S.
Baumgartner, M.
Breit, H. C.
Winkel, D. J.
Sommer, G.
Stieltjes, B.
Thaiss, W.
Bremerich, J.
Maier-Hein, K. H.
Sauter, A. W.
Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation
title Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation
title_full Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation
title_fullStr Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation
title_full_unstemmed Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation
title_short Automated lung cancer assessment on 18F-PET/CT using Retina U-Net and anatomical region segmentation
title_sort automated lung cancer assessment on 18f-pet/ct using retina u-net and anatomical region segmentation
topic Imaging Informatics and Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10182147/
https://www.ncbi.nlm.nih.gov/pubmed/36625882
http://dx.doi.org/10.1007/s00330-022-09332-y
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