Cargando…

Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma

BACKGROUND: Lung cancer is one of the most common malignant tumors in the world. Exportins are closely associated with the cellular activity and disease progression in a variety of different tumors. However, the expression level, genetic variation, immune infiltration, and biological function of dif...

Descripción completa

Detalles Bibliográficos
Autores principales: Pan, Meini, Huang, Peng, Li, Linmao, Lei, Peng, Fang, Lini, Zhao, Lifeng, Li, Yepeng, Huang, Shiqing, Luo, Weigui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10183495/
https://www.ncbi.nlm.nih.gov/pubmed/37197486
http://dx.doi.org/10.21037/jtd-23-228
_version_ 1785041961444442112
author Pan, Meini
Huang, Peng
Li, Linmao
Lei, Peng
Fang, Lini
Zhao, Lifeng
Li, Yepeng
Huang, Shiqing
Luo, Weigui
author_facet Pan, Meini
Huang, Peng
Li, Linmao
Lei, Peng
Fang, Lini
Zhao, Lifeng
Li, Yepeng
Huang, Shiqing
Luo, Weigui
author_sort Pan, Meini
collection PubMed
description BACKGROUND: Lung cancer is one of the most common malignant tumors in the world. Exportins are closely associated with the cellular activity and disease progression in a variety of different tumors. However, the expression level, genetic variation, immune infiltration, and biological function of different exportins in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), as well as their relationship with the prognosis of patients with LUAD and LUSC have not been fully clarified. METHODS: To analyze the differential expression, prognostic value, genetic variation, biological function, and immune cell infiltration of exportins in patients with LUAD and LUSC, the ONCOMINE; UALCAN; Human Protein Atlas (HPA); Kaplan-Meier plotter; cBioPortal; Search Tool for the Retrieval of Interacting Genes/Proteins (STRING); Database for Annotation, Visualization, and Integrated Discovery (DAVID); Tumor Immune Estimation Resource (TIMER); and LinkedOmics databases were used in this study. RESULTS: The transcriptional and protein expression levels of CSE1L and XPO1/5/6/7 were increased in patients with LUAD and LUSC, and the increased transcriptional levels of CSE1L and XPO5/6/7 were related to worse prognosis. An increased transcriptional level of XPO1 was associated with a better prognosis. These results indicated that CSE1L and XPO1/5/6/7 may be potential prognostic biomarkers for the survival of patients with LUAD and LUSC. Moreover, the high mutation rate of exportins in non-small cell lung cancer was 50.48%, and the largest proportion of mutations included high messenger RNA expression. The expression of exportins was significantly correlated with the infiltration of various immune cells. Differentially expressed exportins could regulate the occurrence and development of LUAD and LUSC by involving a variety of microRNAs and transcription factor E2F1. CONCLUSIONS: Our study provides novel insights into the selection of prognostic biomarkers of exportins in LUAD and LUSC.
format Online
Article
Text
id pubmed-10183495
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher AME Publishing Company
record_format MEDLINE/PubMed
spelling pubmed-101834952023-05-16 Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma Pan, Meini Huang, Peng Li, Linmao Lei, Peng Fang, Lini Zhao, Lifeng Li, Yepeng Huang, Shiqing Luo, Weigui J Thorac Dis Original Article BACKGROUND: Lung cancer is one of the most common malignant tumors in the world. Exportins are closely associated with the cellular activity and disease progression in a variety of different tumors. However, the expression level, genetic variation, immune infiltration, and biological function of different exportins in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), as well as their relationship with the prognosis of patients with LUAD and LUSC have not been fully clarified. METHODS: To analyze the differential expression, prognostic value, genetic variation, biological function, and immune cell infiltration of exportins in patients with LUAD and LUSC, the ONCOMINE; UALCAN; Human Protein Atlas (HPA); Kaplan-Meier plotter; cBioPortal; Search Tool for the Retrieval of Interacting Genes/Proteins (STRING); Database for Annotation, Visualization, and Integrated Discovery (DAVID); Tumor Immune Estimation Resource (TIMER); and LinkedOmics databases were used in this study. RESULTS: The transcriptional and protein expression levels of CSE1L and XPO1/5/6/7 were increased in patients with LUAD and LUSC, and the increased transcriptional levels of CSE1L and XPO5/6/7 were related to worse prognosis. An increased transcriptional level of XPO1 was associated with a better prognosis. These results indicated that CSE1L and XPO1/5/6/7 may be potential prognostic biomarkers for the survival of patients with LUAD and LUSC. Moreover, the high mutation rate of exportins in non-small cell lung cancer was 50.48%, and the largest proportion of mutations included high messenger RNA expression. The expression of exportins was significantly correlated with the infiltration of various immune cells. Differentially expressed exportins could regulate the occurrence and development of LUAD and LUSC by involving a variety of microRNAs and transcription factor E2F1. CONCLUSIONS: Our study provides novel insights into the selection of prognostic biomarkers of exportins in LUAD and LUSC. AME Publishing Company 2023-04-24 2023-04-28 /pmc/articles/PMC10183495/ /pubmed/37197486 http://dx.doi.org/10.21037/jtd-23-228 Text en 2023 Journal of Thoracic Disease. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Pan, Meini
Huang, Peng
Li, Linmao
Lei, Peng
Fang, Lini
Zhao, Lifeng
Li, Yepeng
Huang, Shiqing
Luo, Weigui
Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma
title Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma
title_full Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma
title_fullStr Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma
title_full_unstemmed Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma
title_short Comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma
title_sort comprehensive bioinformatics analysis on exportins in lung adenocarcinoma and lung squamous cell carcinoma
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10183495/
https://www.ncbi.nlm.nih.gov/pubmed/37197486
http://dx.doi.org/10.21037/jtd-23-228
work_keys_str_mv AT panmeini comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT huangpeng comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT lilinmao comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT leipeng comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT fanglini comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT zhaolifeng comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT liyepeng comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT huangshiqing comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma
AT luoweigui comprehensivebioinformaticsanalysisonexportinsinlungadenocarcinomaandlungsquamouscellcarcinoma