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Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis
Renal transplantation is the only efficacious treatment for end‐stage kidney disease. However, some people have developed renal insufficiency after transplantation, the mechanisms of which have not been well clarified. Previous studies have focused on patient factors, while the effect of gene expres...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10183702/ https://www.ncbi.nlm.nih.gov/pubmed/37002788 http://dx.doi.org/10.1111/jcmm.17737 |
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author | Cao, Zhijun Jiang, Hao Zhao, Chunchun Zhou, Huifeng Ma, Zheng Xu, Chen Zhang, Jianglei Jiang, Minjun Wang, Zhenfan |
author_facet | Cao, Zhijun Jiang, Hao Zhao, Chunchun Zhou, Huifeng Ma, Zheng Xu, Chen Zhang, Jianglei Jiang, Minjun Wang, Zhenfan |
author_sort | Cao, Zhijun |
collection | PubMed |
description | Renal transplantation is the only efficacious treatment for end‐stage kidney disease. However, some people have developed renal insufficiency after transplantation, the mechanisms of which have not been well clarified. Previous studies have focused on patient factors, while the effect of gene expression in the donor kidney on post‐transplant renal function has been less studied. Donor kidney clinical data and mRNA expression status were extracted from the GEO database (GSE147451). Weight gene co‐expression network analysis (WGCNA) and differential gene enrichment analysis were performed. For external validation, we collected data from 122 patients who accepted renal transplantation at several hospitals and measured the level of target genes by qPCR. This study included 192 patients from the GEO data set, and 13 co‐expressed genes were confirmed by WGCNA and differential gene enrichment analysis. Then, the PPI network contained 17 edges as well as 12 nodes, and four central genes (PRKDC, RFC5, RFC3 and RBM14) were identified. We found by collecting data from 122 patients who underwent renal transplantation in several hospitals and by multivariate logistic regression that acute graft‐versus‐host disease postoperative infection, PRKDC [Hazard Ratio (HR) = 4.44; 95% CI = [1.60, 13.68]; p = 0.006] mRNA level correlated with the renal function after transplantation. The prediction model constructed had good predictive accuracy (C‐index = 0.886). Elevated levels of donor kidney PRKDC are associated with renal dysfunction after transplantation. The prediction model of renal function status for post‐transplant recipients based on PRKDC has good predictive accuracy and clinical application. |
format | Online Article Text |
id | pubmed-10183702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-101837022023-05-16 Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis Cao, Zhijun Jiang, Hao Zhao, Chunchun Zhou, Huifeng Ma, Zheng Xu, Chen Zhang, Jianglei Jiang, Minjun Wang, Zhenfan J Cell Mol Med Original Articles Renal transplantation is the only efficacious treatment for end‐stage kidney disease. However, some people have developed renal insufficiency after transplantation, the mechanisms of which have not been well clarified. Previous studies have focused on patient factors, while the effect of gene expression in the donor kidney on post‐transplant renal function has been less studied. Donor kidney clinical data and mRNA expression status were extracted from the GEO database (GSE147451). Weight gene co‐expression network analysis (WGCNA) and differential gene enrichment analysis were performed. For external validation, we collected data from 122 patients who accepted renal transplantation at several hospitals and measured the level of target genes by qPCR. This study included 192 patients from the GEO data set, and 13 co‐expressed genes were confirmed by WGCNA and differential gene enrichment analysis. Then, the PPI network contained 17 edges as well as 12 nodes, and four central genes (PRKDC, RFC5, RFC3 and RBM14) were identified. We found by collecting data from 122 patients who underwent renal transplantation in several hospitals and by multivariate logistic regression that acute graft‐versus‐host disease postoperative infection, PRKDC [Hazard Ratio (HR) = 4.44; 95% CI = [1.60, 13.68]; p = 0.006] mRNA level correlated with the renal function after transplantation. The prediction model constructed had good predictive accuracy (C‐index = 0.886). Elevated levels of donor kidney PRKDC are associated with renal dysfunction after transplantation. The prediction model of renal function status for post‐transplant recipients based on PRKDC has good predictive accuracy and clinical application. John Wiley and Sons Inc. 2023-04-01 /pmc/articles/PMC10183702/ /pubmed/37002788 http://dx.doi.org/10.1111/jcmm.17737 Text en © 2023 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Cao, Zhijun Jiang, Hao Zhao, Chunchun Zhou, Huifeng Ma, Zheng Xu, Chen Zhang, Jianglei Jiang, Minjun Wang, Zhenfan Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis |
title | Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis |
title_full | Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis |
title_fullStr | Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis |
title_full_unstemmed | Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis |
title_short | Up‐regulation of PRKDC was associated with poor renal dysfunction after renal transplantation: A multi‐centre analysis |
title_sort | up‐regulation of prkdc was associated with poor renal dysfunction after renal transplantation: a multi‐centre analysis |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10183702/ https://www.ncbi.nlm.nih.gov/pubmed/37002788 http://dx.doi.org/10.1111/jcmm.17737 |
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