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Identification and validation of m5c-related lncRNA risk model for ovarian cancer

Ovarian cancer (OC) is one of the common malignant tumors that seriously threaten women's health, and there is a lack of clinical prognostic predictors, while m5c and lncRNA have been shown to be predictive of multiple cancers, including OC. Therefore, our goal was to construct a risk model for...

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Autores principales: Wang, Chong, Zhang, Chunxiao, Yang, Shimin, Xiang, Jiangdong, Zhou, Dongmei, Xi, Xiaowei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10184408/
https://www.ncbi.nlm.nih.gov/pubmed/37183262
http://dx.doi.org/10.1186/s13048-023-01182-6
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author Wang, Chong
Zhang, Chunxiao
Yang, Shimin
Xiang, Jiangdong
Zhou, Dongmei
Xi, Xiaowei
author_facet Wang, Chong
Zhang, Chunxiao
Yang, Shimin
Xiang, Jiangdong
Zhou, Dongmei
Xi, Xiaowei
author_sort Wang, Chong
collection PubMed
description Ovarian cancer (OC) is one of the common malignant tumors that seriously threaten women's health, and there is a lack of clinical prognostic predictors, while m5c and lncRNA have been shown to be predictive of multiple cancers, including OC. Therefore, our goal was to construct a risk model for OC based on m5c-related lncRNA.340 m5c-related lncRNA were identified and a novel risk model of OC ground on nine m5C-related lncRNA was constructed using LASSO-COX regression analysis. Kaplan–Meier analysis showed there was a significant difference in prognosis between risk groups. We established a nomogram which was a good predictor of overall survival. In addition, GSEA was enriched in multiple pathways and immune function analysis suggested that immune infiltration varies depending on the risk group. In vitro experiments show that AC005562.1, a key lncRNA of the risk model, is highly expressed in OC cells and promotes OC cell proliferation. Finally, we further explored the potential biological markers of m5c-related lncRNA in OC with WGCNA analysis and established a ceRNA network. In conclusion,we have developed a reliable m5c-related prediction model and performed systematic validation and exploration of various aspects. These results can be used for the assessment of OC prognosis and the discovery of novel biomarkers. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13048-023-01182-6.
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spelling pubmed-101844082023-05-16 Identification and validation of m5c-related lncRNA risk model for ovarian cancer Wang, Chong Zhang, Chunxiao Yang, Shimin Xiang, Jiangdong Zhou, Dongmei Xi, Xiaowei J Ovarian Res Research Ovarian cancer (OC) is one of the common malignant tumors that seriously threaten women's health, and there is a lack of clinical prognostic predictors, while m5c and lncRNA have been shown to be predictive of multiple cancers, including OC. Therefore, our goal was to construct a risk model for OC based on m5c-related lncRNA.340 m5c-related lncRNA were identified and a novel risk model of OC ground on nine m5C-related lncRNA was constructed using LASSO-COX regression analysis. Kaplan–Meier analysis showed there was a significant difference in prognosis between risk groups. We established a nomogram which was a good predictor of overall survival. In addition, GSEA was enriched in multiple pathways and immune function analysis suggested that immune infiltration varies depending on the risk group. In vitro experiments show that AC005562.1, a key lncRNA of the risk model, is highly expressed in OC cells and promotes OC cell proliferation. Finally, we further explored the potential biological markers of m5c-related lncRNA in OC with WGCNA analysis and established a ceRNA network. In conclusion,we have developed a reliable m5c-related prediction model and performed systematic validation and exploration of various aspects. These results can be used for the assessment of OC prognosis and the discovery of novel biomarkers. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13048-023-01182-6. BioMed Central 2023-05-15 /pmc/articles/PMC10184408/ /pubmed/37183262 http://dx.doi.org/10.1186/s13048-023-01182-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Wang, Chong
Zhang, Chunxiao
Yang, Shimin
Xiang, Jiangdong
Zhou, Dongmei
Xi, Xiaowei
Identification and validation of m5c-related lncRNA risk model for ovarian cancer
title Identification and validation of m5c-related lncRNA risk model for ovarian cancer
title_full Identification and validation of m5c-related lncRNA risk model for ovarian cancer
title_fullStr Identification and validation of m5c-related lncRNA risk model for ovarian cancer
title_full_unstemmed Identification and validation of m5c-related lncRNA risk model for ovarian cancer
title_short Identification and validation of m5c-related lncRNA risk model for ovarian cancer
title_sort identification and validation of m5c-related lncrna risk model for ovarian cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10184408/
https://www.ncbi.nlm.nih.gov/pubmed/37183262
http://dx.doi.org/10.1186/s13048-023-01182-6
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