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Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model
We propose an algorithm for modeling scenarios for newly diagnosed cases of COVID-19 in the Republic of Kazakhstan. The algorithm is based on treating incomplete epidemiological data and solving the inverse problem of reconstructing the parameters of the agent-based model (ABM) using the set of avai...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pleiades Publishing
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10184641/ http://dx.doi.org/10.1134/S1990478923010118 |
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author | Krivorotko, O. I. Kabanikhin, S. I. Bektemesov, M. A. Sosnovskaya, M. I. Neverov, A. V. |
author_facet | Krivorotko, O. I. Kabanikhin, S. I. Bektemesov, M. A. Sosnovskaya, M. I. Neverov, A. V. |
author_sort | Krivorotko, O. I. |
collection | PubMed |
description | We propose an algorithm for modeling scenarios for newly diagnosed cases of COVID-19 in the Republic of Kazakhstan. The algorithm is based on treating incomplete epidemiological data and solving the inverse problem of reconstructing the parameters of the agent-based model (ABM) using the set of available epidemiological data. The main tool for constructing the ABM is the Covasim open library. In the event of a drastic change in the situation (appearance of a new strain, removal or introduction of restrictive measures, etc.), the model parameters are updated taking into account additional information for the previous month (online data assimilation). The inverse problem is solved by stochastic global optimization (of tree-structured Parzen estimators). As an example, we give two scenarios of COVID-19 propagation calculated on December 12, 2021 for the period up to January 20, 2022. The scenario that took into account the New Year holidays (published on December 12, 2021 on http://covid19-modeling.ru ) almost coincided with what happened in reality (the error was 0.2%). |
format | Online Article Text |
id | pubmed-10184641 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Pleiades Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-101846412023-05-16 Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model Krivorotko, O. I. Kabanikhin, S. I. Bektemesov, M. A. Sosnovskaya, M. I. Neverov, A. V. J. Appl. Ind. Math. Article We propose an algorithm for modeling scenarios for newly diagnosed cases of COVID-19 in the Republic of Kazakhstan. The algorithm is based on treating incomplete epidemiological data and solving the inverse problem of reconstructing the parameters of the agent-based model (ABM) using the set of available epidemiological data. The main tool for constructing the ABM is the Covasim open library. In the event of a drastic change in the situation (appearance of a new strain, removal or introduction of restrictive measures, etc.), the model parameters are updated taking into account additional information for the previous month (online data assimilation). The inverse problem is solved by stochastic global optimization (of tree-structured Parzen estimators). As an example, we give two scenarios of COVID-19 propagation calculated on December 12, 2021 for the period up to January 20, 2022. The scenario that took into account the New Year holidays (published on December 12, 2021 on http://covid19-modeling.ru ) almost coincided with what happened in reality (the error was 0.2%). Pleiades Publishing 2023-05-15 2023 /pmc/articles/PMC10184641/ http://dx.doi.org/10.1134/S1990478923010118 Text en © Pleiades Publishing, Ltd. 2023 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Krivorotko, O. I. Kabanikhin, S. I. Bektemesov, M. A. Sosnovskaya, M. I. Neverov, A. V. Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model |
title | Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model |
title_full | Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model |
title_fullStr | Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model |
title_full_unstemmed | Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model |
title_short | Simulation of COVID-19 Spread Scenarios in the Republic of Kazakhstan Based on Regularization of the Agent-Based Model |
title_sort | simulation of covid-19 spread scenarios in the republic of kazakhstan based on regularization of the agent-based model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10184641/ http://dx.doi.org/10.1134/S1990478923010118 |
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