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Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19
COVID-19 has resulted in epidemi conditions over the world. Despite efforts by scientists from all over the world to develop an effective va ine against this virus, there is presently no recognized cure for COVID-19. The most succeed treatments for various ailments come from natural components found...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Pleiades Publishing
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10184967/ https://www.ncbi.nlm.nih.gov/pubmed/37360903 http://dx.doi.org/10.1134/S0021364023600039 |
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author | Gurushankar, K. Jeyaseelan, S. Ch. Grishina, M. Siswanto, I. Tiwari, R. Puspaningsih, N. N. T. |
author_facet | Gurushankar, K. Jeyaseelan, S. Ch. Grishina, M. Siswanto, I. Tiwari, R. Puspaningsih, N. N. T. |
author_sort | Gurushankar, K. |
collection | PubMed |
description | COVID-19 has resulted in epidemi conditions over the world. Despite efforts by scientists from all over the world to develop an effective va ine against this virus, there is presently no recognized cure for COVID-19. The most succeed treatments for various ailments come from natural components found in medicinal plants, which are also rucial for the development of new medications. This study intends to understand the role of the baimantuoluoamide A and baimantuoluoamide B molecules in the treatment of Covid19. Initially, density functional theory (DFT) used to explore their electronic potentials along with the Becke3-Lee-Yang-Parr (B3LYP) 6-311 + G(d, p) basis set. A number of characteristics, including the energy gap, hardness, local softness, electronegativity, and electrophilicity, have also been calculated to discuss the reactivity of mole ules. Using natural bond orbital, the title compound’s bioactive nature and stability were investigated. Further, both compounds potential inhibitors with main protease (M(pro)) proteins, molecular dynamics simulations and AlteQ investigations also studied. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1134/S0021364023600039. |
format | Online Article Text |
id | pubmed-10184967 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Pleiades Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-101849672023-05-16 Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19 Gurushankar, K. Jeyaseelan, S. Ch. Grishina, M. Siswanto, I. Tiwari, R. Puspaningsih, N. N. T. JETP Lett Article COVID-19 has resulted in epidemi conditions over the world. Despite efforts by scientists from all over the world to develop an effective va ine against this virus, there is presently no recognized cure for COVID-19. The most succeed treatments for various ailments come from natural components found in medicinal plants, which are also rucial for the development of new medications. This study intends to understand the role of the baimantuoluoamide A and baimantuoluoamide B molecules in the treatment of Covid19. Initially, density functional theory (DFT) used to explore their electronic potentials along with the Becke3-Lee-Yang-Parr (B3LYP) 6-311 + G(d, p) basis set. A number of characteristics, including the energy gap, hardness, local softness, electronegativity, and electrophilicity, have also been calculated to discuss the reactivity of mole ules. Using natural bond orbital, the title compound’s bioactive nature and stability were investigated. Further, both compounds potential inhibitors with main protease (M(pro)) proteins, molecular dynamics simulations and AlteQ investigations also studied. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1134/S0021364023600039. Pleiades Publishing 2023-05-15 /pmc/articles/PMC10184967/ /pubmed/37360903 http://dx.doi.org/10.1134/S0021364023600039 Text en © The Author(s) 2023, ISSN 0021-3640, JETP Letters, 2023. © The Author(s), 2023. This article is an open access publication. https://creativecommons.org/licenses/by/4.0/Open Access.This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Gurushankar, K. Jeyaseelan, S. Ch. Grishina, M. Siswanto, I. Tiwari, R. Puspaningsih, N. N. T. Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19 |
title | Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19 |
title_full | Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19 |
title_fullStr | Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19 |
title_full_unstemmed | Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19 |
title_short | Density Functional Theory, Molecular Dynamics and AlteQ Studies Approaches of Baimantuoluoamide A and Baimantuoluoamide B to Identify Potential Inhibitors of M(pro) Proteins: a Novel Target for the Treatment of SARS COVID-19 |
title_sort | density functional theory, molecular dynamics and alteq studies approaches of baimantuoluoamide a and baimantuoluoamide b to identify potential inhibitors of m(pro) proteins: a novel target for the treatment of sars covid-19 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10184967/ https://www.ncbi.nlm.nih.gov/pubmed/37360903 http://dx.doi.org/10.1134/S0021364023600039 |
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