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Architector for high-throughput cross-periodic table 3D complex building
Rare-earth and actinide complexes are critical for a wealth of clean-energy applications. Three-dimensional (3D) structural generation and prediction for these organometallic systems remains a challenge, limiting opportunities for computational chemical discovery. Here, we introduce Architector, a h...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10185541/ https://www.ncbi.nlm.nih.gov/pubmed/37188661 http://dx.doi.org/10.1038/s41467-023-38169-2 |
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author | Taylor, Michael G. Burrill, Daniel J. Janssen, Jan Batista, Enrique R. Perez, Danny Yang, Ping |
author_facet | Taylor, Michael G. Burrill, Daniel J. Janssen, Jan Batista, Enrique R. Perez, Danny Yang, Ping |
author_sort | Taylor, Michael G. |
collection | PubMed |
description | Rare-earth and actinide complexes are critical for a wealth of clean-energy applications. Three-dimensional (3D) structural generation and prediction for these organometallic systems remains a challenge, limiting opportunities for computational chemical discovery. Here, we introduce Architector, a high-throughput in-silico synthesis code for s-, p-, d-, and f-block mononuclear organometallic complexes capable of capturing nearly the full diversity of the known experimental chemical space. Beyond known chemical space, Architector performs in-silico design of new complexes including any chemically accessible metal-ligand combinations. Architector leverages metal-center symmetry, interatomic force fields, and tight binding methods to build many possible 3D conformers from minimal 2D inputs including metal oxidation and spin state. Over a set of more than 6,000 x-ray diffraction (XRD)-determined complexes spanning the periodic table, we demonstrate quantitative agreement between Architector-predicted and experimentally observed structures. Further, we demonstrate out-of-the box conformer generation and energetic rankings of non-minimum energy conformers produced from Architector, which are critical for exploring potential energy surfaces and training force fields. Overall, Architector represents a transformative step towards cross-periodic table computational design of metal complex chemistry. |
format | Online Article Text |
id | pubmed-10185541 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101855412023-05-17 Architector for high-throughput cross-periodic table 3D complex building Taylor, Michael G. Burrill, Daniel J. Janssen, Jan Batista, Enrique R. Perez, Danny Yang, Ping Nat Commun Article Rare-earth and actinide complexes are critical for a wealth of clean-energy applications. Three-dimensional (3D) structural generation and prediction for these organometallic systems remains a challenge, limiting opportunities for computational chemical discovery. Here, we introduce Architector, a high-throughput in-silico synthesis code for s-, p-, d-, and f-block mononuclear organometallic complexes capable of capturing nearly the full diversity of the known experimental chemical space. Beyond known chemical space, Architector performs in-silico design of new complexes including any chemically accessible metal-ligand combinations. Architector leverages metal-center symmetry, interatomic force fields, and tight binding methods to build many possible 3D conformers from minimal 2D inputs including metal oxidation and spin state. Over a set of more than 6,000 x-ray diffraction (XRD)-determined complexes spanning the periodic table, we demonstrate quantitative agreement between Architector-predicted and experimentally observed structures. Further, we demonstrate out-of-the box conformer generation and energetic rankings of non-minimum energy conformers produced from Architector, which are critical for exploring potential energy surfaces and training force fields. Overall, Architector represents a transformative step towards cross-periodic table computational design of metal complex chemistry. Nature Publishing Group UK 2023-05-15 /pmc/articles/PMC10185541/ /pubmed/37188661 http://dx.doi.org/10.1038/s41467-023-38169-2 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Taylor, Michael G. Burrill, Daniel J. Janssen, Jan Batista, Enrique R. Perez, Danny Yang, Ping Architector for high-throughput cross-periodic table 3D complex building |
title | Architector for high-throughput cross-periodic table 3D complex building |
title_full | Architector for high-throughput cross-periodic table 3D complex building |
title_fullStr | Architector for high-throughput cross-periodic table 3D complex building |
title_full_unstemmed | Architector for high-throughput cross-periodic table 3D complex building |
title_short | Architector for high-throughput cross-periodic table 3D complex building |
title_sort | architector for high-throughput cross-periodic table 3d complex building |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10185541/ https://www.ncbi.nlm.nih.gov/pubmed/37188661 http://dx.doi.org/10.1038/s41467-023-38169-2 |
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