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Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study

BACKGROUND: 2021 World Health Organization (WHO) Central Nervous System (CNS) tumor classification increasingly emphasizes the important role of molecular markers in glioma diagnoses. Preoperatively non-invasive “integrated diagnosis” will bring great benefits to the treatment and prognosis of these...

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Autores principales: Hu, Ping, Xu, Ling, Qi, Yangzhi, Yan, Tengfeng, Ye, Liguo, Wen, Shen, Yuan, Dalong, Zhu, Xinyi, Deng, Shuhang, Liu, Xun, Xu, Panpan, You, Ran, Wang, Dongfang, Liang, Shanwen, Wu, Yu, Xu, Yang, Sun, Qian, Du, Senlin, Yuan, Ye, Deng, Gang, Cheng, Jing, Zhang, Dong, Chen, Qianxue, Zhu, Xingen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10185782/
https://www.ncbi.nlm.nih.gov/pubmed/37201155
http://dx.doi.org/10.3389/fnmol.2023.1183032
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author Hu, Ping
Xu, Ling
Qi, Yangzhi
Yan, Tengfeng
Ye, Liguo
Wen, Shen
Yuan, Dalong
Zhu, Xinyi
Deng, Shuhang
Liu, Xun
Xu, Panpan
You, Ran
Wang, Dongfang
Liang, Shanwen
Wu, Yu
Xu, Yang
Sun, Qian
Du, Senlin
Yuan, Ye
Deng, Gang
Cheng, Jing
Zhang, Dong
Chen, Qianxue
Zhu, Xingen
author_facet Hu, Ping
Xu, Ling
Qi, Yangzhi
Yan, Tengfeng
Ye, Liguo
Wen, Shen
Yuan, Dalong
Zhu, Xinyi
Deng, Shuhang
Liu, Xun
Xu, Panpan
You, Ran
Wang, Dongfang
Liang, Shanwen
Wu, Yu
Xu, Yang
Sun, Qian
Du, Senlin
Yuan, Ye
Deng, Gang
Cheng, Jing
Zhang, Dong
Chen, Qianxue
Zhu, Xingen
author_sort Hu, Ping
collection PubMed
description BACKGROUND: 2021 World Health Organization (WHO) Central Nervous System (CNS) tumor classification increasingly emphasizes the important role of molecular markers in glioma diagnoses. Preoperatively non-invasive “integrated diagnosis” will bring great benefits to the treatment and prognosis of these patients with special tumor locations that cannot receive craniotomy or needle biopsy. Magnetic resonance imaging (MRI) radiomics and liquid biopsy (LB) have great potential for non-invasive diagnosis of molecular markers and grading since they are both easy to perform. This study aims to build a novel multi-task deep learning (DL) radiomic model to achieve preoperative non-invasive “integrated diagnosis” of glioma based on the 2021 WHO-CNS classification and explore whether the DL model with LB parameters can improve the performance of glioma diagnosis. METHODS: This is a double-center, ambispective, diagnostical observational study. One public database named the 2019 Brain Tumor Segmentation challenge dataset (BraTS) and two original datasets, including the Second Affiliated Hospital of Nanchang University, and Renmin Hospital of Wuhan University, will be used to develop the multi-task DL radiomic model. As one of the LB techniques, circulating tumor cell (CTC) parameters will be additionally applied in the DL radiomic model for assisting the “integrated diagnosis” of glioma. The segmentation model will be evaluated with the Dice index, and the performance of the DL model for WHO grading and all molecular subtype will be evaluated with the indicators of accuracy, precision, and recall. DISCUSSION: Simply relying on radiomics features to find the correlation with the molecular subtypes of gliomas can no longer meet the need for “precisely integrated prediction.” CTC features are a promising biomarker that may provide new directions in the exploration of “precision integrated prediction” based on the radiomics, and this is the first original study that combination of radiomics and LB technology for glioma diagnosis. We firmly believe that this innovative work will surely lay a good foundation for the “precisely integrated prediction” of glioma and point out further directions for future research. CLINICAL TRAIL REGISTRATION: This study was registered on ClinicalTrails.gov on 09/10/2022 with Identifier NCT05536024.
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spelling pubmed-101857822023-05-17 Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study Hu, Ping Xu, Ling Qi, Yangzhi Yan, Tengfeng Ye, Liguo Wen, Shen Yuan, Dalong Zhu, Xinyi Deng, Shuhang Liu, Xun Xu, Panpan You, Ran Wang, Dongfang Liang, Shanwen Wu, Yu Xu, Yang Sun, Qian Du, Senlin Yuan, Ye Deng, Gang Cheng, Jing Zhang, Dong Chen, Qianxue Zhu, Xingen Front Mol Neurosci Molecular Neuroscience BACKGROUND: 2021 World Health Organization (WHO) Central Nervous System (CNS) tumor classification increasingly emphasizes the important role of molecular markers in glioma diagnoses. Preoperatively non-invasive “integrated diagnosis” will bring great benefits to the treatment and prognosis of these patients with special tumor locations that cannot receive craniotomy or needle biopsy. Magnetic resonance imaging (MRI) radiomics and liquid biopsy (LB) have great potential for non-invasive diagnosis of molecular markers and grading since they are both easy to perform. This study aims to build a novel multi-task deep learning (DL) radiomic model to achieve preoperative non-invasive “integrated diagnosis” of glioma based on the 2021 WHO-CNS classification and explore whether the DL model with LB parameters can improve the performance of glioma diagnosis. METHODS: This is a double-center, ambispective, diagnostical observational study. One public database named the 2019 Brain Tumor Segmentation challenge dataset (BraTS) and two original datasets, including the Second Affiliated Hospital of Nanchang University, and Renmin Hospital of Wuhan University, will be used to develop the multi-task DL radiomic model. As one of the LB techniques, circulating tumor cell (CTC) parameters will be additionally applied in the DL radiomic model for assisting the “integrated diagnosis” of glioma. The segmentation model will be evaluated with the Dice index, and the performance of the DL model for WHO grading and all molecular subtype will be evaluated with the indicators of accuracy, precision, and recall. DISCUSSION: Simply relying on radiomics features to find the correlation with the molecular subtypes of gliomas can no longer meet the need for “precisely integrated prediction.” CTC features are a promising biomarker that may provide new directions in the exploration of “precision integrated prediction” based on the radiomics, and this is the first original study that combination of radiomics and LB technology for glioma diagnosis. We firmly believe that this innovative work will surely lay a good foundation for the “precisely integrated prediction” of glioma and point out further directions for future research. CLINICAL TRAIL REGISTRATION: This study was registered on ClinicalTrails.gov on 09/10/2022 with Identifier NCT05536024. Frontiers Media S.A. 2023-05-02 /pmc/articles/PMC10185782/ /pubmed/37201155 http://dx.doi.org/10.3389/fnmol.2023.1183032 Text en Copyright © 2023 Hu, Xu, Qi, Yan, Ye, Wen, Yuan, Zhu, Deng, Liu, Xu, You, Wang, Liang, Wu, Xu, Sun, Du, Yuan, Deng, Cheng, Zhang, Chen and Zhu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Neuroscience
Hu, Ping
Xu, Ling
Qi, Yangzhi
Yan, Tengfeng
Ye, Liguo
Wen, Shen
Yuan, Dalong
Zhu, Xinyi
Deng, Shuhang
Liu, Xun
Xu, Panpan
You, Ran
Wang, Dongfang
Liang, Shanwen
Wu, Yu
Xu, Yang
Sun, Qian
Du, Senlin
Yuan, Ye
Deng, Gang
Cheng, Jing
Zhang, Dong
Chen, Qianxue
Zhu, Xingen
Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study
title Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study
title_full Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study
title_fullStr Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study
title_full_unstemmed Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study
title_short Combination of multi-modal MRI radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study
title_sort combination of multi-modal mri radiomics and liquid biopsy technique for preoperatively non-invasive diagnosis of glioma based on deep learning: protocol for a double-center, ambispective, diagnostical observational study
topic Molecular Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10185782/
https://www.ncbi.nlm.nih.gov/pubmed/37201155
http://dx.doi.org/10.3389/fnmol.2023.1183032
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