The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae)

Syringa oblata var. alba is a shrub or a small tree from China with high ornamental, medicinal, and edible value. Here, we present its first complete chloroplast genome. The entire circular genome is 155,648 bp in length, with large single-copy (LSC) length of 86,247, small single-copy (SSC) length...

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Autores principales: Men, Wen-Xiao, Bian, Che, Song, Yue-Yue, Xing, Yan-Ping, Xue, He-Fei, Xu, Liang, Xie, Ming, Kang, Ting-Guo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
MitoGenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10187082/
https://www.ncbi.nlm.nih.gov/pubmed/37200679
http://dx.doi.org/10.1080/23802359.2023.2209386
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author Men, Wen-Xiao
Bian, Che
Song, Yue-Yue
Xing, Yan-Ping
Xue, He-Fei
Xu, Liang
Xie, Ming
Kang, Ting-Guo
author_facet Men, Wen-Xiao
Bian, Che
Song, Yue-Yue
Xing, Yan-Ping
Xue, He-Fei
Xu, Liang
Xie, Ming
Kang, Ting-Guo
author_sort Men, Wen-Xiao
collection PubMed
description Syringa oblata var. alba is a shrub or a small tree from China with high ornamental, medicinal, and edible value. Here, we present its first complete chloroplast genome. The entire circular genome is 155,648 bp in length, with large single-copy (LSC) length of 86,247, small single-copy (SSC) length of 17,937, inverted repeat (IR) length of 25,732, and GC content of 37.9%. One hundred and thirty-two genes, including 88 protein-coding, 36 tRNA, and eight rRNA genes were predicted. A phylogenetic tree of 25 plant species was constructed based on the maximum-likelihood method, indicating that S. oblata var. alba, S. vulgaris, and S. oblata form a sister group. This study will provide valuable basic information for phylogeny, species identification, and varieties breeding of this species.
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spelling pubmed-101870822023-05-17 The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae) Men, Wen-Xiao Bian, Che Song, Yue-Yue Xing, Yan-Ping Xue, He-Fei Xu, Liang Xie, Ming Kang, Ting-Guo Mitochondrial DNA B Resour MitoGenome Announcement Syringa oblata var. alba is a shrub or a small tree from China with high ornamental, medicinal, and edible value. Here, we present its first complete chloroplast genome. The entire circular genome is 155,648 bp in length, with large single-copy (LSC) length of 86,247, small single-copy (SSC) length of 17,937, inverted repeat (IR) length of 25,732, and GC content of 37.9%. One hundred and thirty-two genes, including 88 protein-coding, 36 tRNA, and eight rRNA genes were predicted. A phylogenetic tree of 25 plant species was constructed based on the maximum-likelihood method, indicating that S. oblata var. alba, S. vulgaris, and S. oblata form a sister group. This study will provide valuable basic information for phylogeny, species identification, and varieties breeding of this species. Taylor & Francis 2023-05-15 /pmc/articles/PMC10187082/ /pubmed/37200679 http://dx.doi.org/10.1080/23802359.2023.2209386 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle MitoGenome Announcement
Men, Wen-Xiao
Bian, Che
Song, Yue-Yue
Xing, Yan-Ping
Xue, He-Fei
Xu, Liang
Xie, Ming
Kang, Ting-Guo
The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae)
title The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae)
title_full The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae)
title_fullStr The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae)
title_full_unstemmed The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae)
title_short The complete chloroplast genome sequence of Syringa oblata Lindl. var. alba Hort. ex Rehd. 1763 (Oleaceae)
title_sort complete chloroplast genome sequence of syringa oblata lindl. var. alba hort. ex rehd. 1763 (oleaceae)
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10187082/
https://www.ncbi.nlm.nih.gov/pubmed/37200679
http://dx.doi.org/10.1080/23802359.2023.2209386
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