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Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam

BACKGROUND: While early detection and early containment are key to controlling the African swine fever (ASF) pandemic, the lack of practical testing methods for use in the field are a major barrier to achieving this feat. OBJECTIVES: To describe the development of a rapid and sensitive point‐of‐care...

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Autores principales: Ngan, Mai Thi, Thi My Le, Huynh, Xuan Dang, Vu, Thi Bich Ngoc, Trinh, Phan, Le Van, Thi Hoa, Nguyen, Quang Lam, Truong, Thi Lan, Nguyen, Notsu, Kosuke, Sekiguchi, Satoshi, Yamazaki, Yasuko, Yamazaki, Wataru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10188095/
https://www.ncbi.nlm.nih.gov/pubmed/37013377
http://dx.doi.org/10.1002/vms3.1124
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author Ngan, Mai Thi
Thi My Le, Huynh
Xuan Dang, Vu
Thi Bich Ngoc, Trinh
Phan, Le Van
Thi Hoa, Nguyen
Quang Lam, Truong
Thi Lan, Nguyen
Notsu, Kosuke
Sekiguchi, Satoshi
Yamazaki, Yasuko
Yamazaki, Wataru
author_facet Ngan, Mai Thi
Thi My Le, Huynh
Xuan Dang, Vu
Thi Bich Ngoc, Trinh
Phan, Le Van
Thi Hoa, Nguyen
Quang Lam, Truong
Thi Lan, Nguyen
Notsu, Kosuke
Sekiguchi, Satoshi
Yamazaki, Yasuko
Yamazaki, Wataru
author_sort Ngan, Mai Thi
collection PubMed
description BACKGROUND: While early detection and early containment are key to controlling the African swine fever (ASF) pandemic, the lack of practical testing methods for use in the field are a major barrier to achieving this feat. OBJECTIVES: To describe the development of a rapid and sensitive point‐of‐care test (POCT) for ASF, and its evaluation using swine whole blood samples for field settings. METHODS: In total, 89 swine whole blood samples were collected from Vietnamese swine farms and were performed the POCT using a combination of crude DNA extraction and LAMP (loop‐mediated isothermal amplification) amplification. RESULTS: The POCT enabled crude DNA to be extracted from swine whole blood samples within 10 min at extremely low cost and with relative ease. The entire POCT required a maximum of 50 min from the beginning of DNA extraction to final judgment. Compared to a conventional real‐time PCR detection, the POCT showed a 1 log reduction in detection sensitivity, but comparable diagnostic sensitivity of 100% (56/56) and diagnostic specificity of 100% (33/33). The POCT was quicker and easier to perform and did not require special equipment. CONCLUSIONS: This POCT is expected to facilitate early diagnosis and containment of ASF invasion into both regions in which it is endemic and eradicated.
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spelling pubmed-101880952023-05-17 Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam Ngan, Mai Thi Thi My Le, Huynh Xuan Dang, Vu Thi Bich Ngoc, Trinh Phan, Le Van Thi Hoa, Nguyen Quang Lam, Truong Thi Lan, Nguyen Notsu, Kosuke Sekiguchi, Satoshi Yamazaki, Yasuko Yamazaki, Wataru Vet Med Sci PIGS BACKGROUND: While early detection and early containment are key to controlling the African swine fever (ASF) pandemic, the lack of practical testing methods for use in the field are a major barrier to achieving this feat. OBJECTIVES: To describe the development of a rapid and sensitive point‐of‐care test (POCT) for ASF, and its evaluation using swine whole blood samples for field settings. METHODS: In total, 89 swine whole blood samples were collected from Vietnamese swine farms and were performed the POCT using a combination of crude DNA extraction and LAMP (loop‐mediated isothermal amplification) amplification. RESULTS: The POCT enabled crude DNA to be extracted from swine whole blood samples within 10 min at extremely low cost and with relative ease. The entire POCT required a maximum of 50 min from the beginning of DNA extraction to final judgment. Compared to a conventional real‐time PCR detection, the POCT showed a 1 log reduction in detection sensitivity, but comparable diagnostic sensitivity of 100% (56/56) and diagnostic specificity of 100% (33/33). The POCT was quicker and easier to perform and did not require special equipment. CONCLUSIONS: This POCT is expected to facilitate early diagnosis and containment of ASF invasion into both regions in which it is endemic and eradicated. John Wiley and Sons Inc. 2023-04-03 /pmc/articles/PMC10188095/ /pubmed/37013377 http://dx.doi.org/10.1002/vms3.1124 Text en © 2023 The Authors. Veterinary Medicine and Science published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle PIGS
Ngan, Mai Thi
Thi My Le, Huynh
Xuan Dang, Vu
Thi Bich Ngoc, Trinh
Phan, Le Van
Thi Hoa, Nguyen
Quang Lam, Truong
Thi Lan, Nguyen
Notsu, Kosuke
Sekiguchi, Satoshi
Yamazaki, Yasuko
Yamazaki, Wataru
Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam
title Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam
title_full Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam
title_fullStr Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam
title_full_unstemmed Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam
title_short Development of a highly sensitive point‐of‐care test for African swine fever that combines EZ‐Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam
title_sort development of a highly sensitive point‐of‐care test for african swine fever that combines ez‐fast dna extraction with lamp detection: evaluation using naturally infected swine whole blood samples from vietnam
topic PIGS
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10188095/
https://www.ncbi.nlm.nih.gov/pubmed/37013377
http://dx.doi.org/10.1002/vms3.1124
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