Cargando…

Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells

Numerous long non-coding RNAs (lncRNAs) are dysregulated in the hyperglycemia-induced phenomenon of metabolic memory (MM). In the present study, the significance of these lncRNAs in MM was explored by screening for MM-involved differentially expressed lncRNAs (MMDELs) in human umbilical vein endothe...

Descripción completa

Detalles Bibliográficos
Autores principales: Cheng, Jingya, Huang, Anqi, Cheng, Ji, Pei, Xiaoyan, Yu, Lei, Jin, Guoxi, Xu, Erqin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10189608/
https://www.ncbi.nlm.nih.gov/pubmed/37206566
http://dx.doi.org/10.3892/etm.2023.11987
_version_ 1785043121049960448
author Cheng, Jingya
Huang, Anqi
Cheng, Ji
Pei, Xiaoyan
Yu, Lei
Jin, Guoxi
Xu, Erqin
author_facet Cheng, Jingya
Huang, Anqi
Cheng, Ji
Pei, Xiaoyan
Yu, Lei
Jin, Guoxi
Xu, Erqin
author_sort Cheng, Jingya
collection PubMed
description Numerous long non-coding RNAs (lncRNAs) are dysregulated in the hyperglycemia-induced phenomenon of metabolic memory (MM). In the present study, the significance of these lncRNAs in MM was explored by screening for MM-involved differentially expressed lncRNAs (MMDELs) in human umbilical vein endothelial cells (HUVECs) induced by high glucose. A total of nine HUVEC samples were divided into three groups to mimic conditions of low and high glucose environments, as well as induce the state of metabolic memory. The expression of lncRNAs was profiled using RNA sequencing. Bioinformatic analysis was performed using the Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes databases to explore the parental genes from which the lncRNAs are transcribed and target genes of the MMDELs and generate enrichment datasets. Reverse transcription-quantitative PCR was performed to validate the expression levels of the selected lncRNAs. The present study identified 308 upregulated and 157 downregulated MMDELs, which were enriched in numerous physiologic processes. Key functional enrichment terms included ‘cell cycle’, ‘oocyte meiosis’ and ‘p53 signaling pathway’. In conclusion, certain MMDELs may regulate the expression level of highly associated mRNAs through various mechanisms and pathways, thereby interfering with several processes, such as the regulation of the cell cycle, and affecting vascular endothelial cell function. Furthermore, the disorders of these lncRNAs can be retained in MM, further investigation into the functions of these lncRNAs may result in novel insights and treatments, which could help control MM in patients with diabetes.
format Online
Article
Text
id pubmed-10189608
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher D.A. Spandidos
record_format MEDLINE/PubMed
spelling pubmed-101896082023-05-18 Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells Cheng, Jingya Huang, Anqi Cheng, Ji Pei, Xiaoyan Yu, Lei Jin, Guoxi Xu, Erqin Exp Ther Med Articles Numerous long non-coding RNAs (lncRNAs) are dysregulated in the hyperglycemia-induced phenomenon of metabolic memory (MM). In the present study, the significance of these lncRNAs in MM was explored by screening for MM-involved differentially expressed lncRNAs (MMDELs) in human umbilical vein endothelial cells (HUVECs) induced by high glucose. A total of nine HUVEC samples were divided into three groups to mimic conditions of low and high glucose environments, as well as induce the state of metabolic memory. The expression of lncRNAs was profiled using RNA sequencing. Bioinformatic analysis was performed using the Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes databases to explore the parental genes from which the lncRNAs are transcribed and target genes of the MMDELs and generate enrichment datasets. Reverse transcription-quantitative PCR was performed to validate the expression levels of the selected lncRNAs. The present study identified 308 upregulated and 157 downregulated MMDELs, which were enriched in numerous physiologic processes. Key functional enrichment terms included ‘cell cycle’, ‘oocyte meiosis’ and ‘p53 signaling pathway’. In conclusion, certain MMDELs may regulate the expression level of highly associated mRNAs through various mechanisms and pathways, thereby interfering with several processes, such as the regulation of the cell cycle, and affecting vascular endothelial cell function. Furthermore, the disorders of these lncRNAs can be retained in MM, further investigation into the functions of these lncRNAs may result in novel insights and treatments, which could help control MM in patients with diabetes. D.A. Spandidos 2023-05-02 /pmc/articles/PMC10189608/ /pubmed/37206566 http://dx.doi.org/10.3892/etm.2023.11987 Text en Copyright: © Cheng et al. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Cheng, Jingya
Huang, Anqi
Cheng, Ji
Pei, Xiaoyan
Yu, Lei
Jin, Guoxi
Xu, Erqin
Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells
title Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells
title_full Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells
title_fullStr Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells
title_full_unstemmed Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells
title_short Profile analysis of differentially expressed long non‑coding RNAs in metabolic memory induced by high glucose in human umbilical vein endothelial cells
title_sort profile analysis of differentially expressed long non‑coding rnas in metabolic memory induced by high glucose in human umbilical vein endothelial cells
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10189608/
https://www.ncbi.nlm.nih.gov/pubmed/37206566
http://dx.doi.org/10.3892/etm.2023.11987
work_keys_str_mv AT chengjingya profileanalysisofdifferentiallyexpressedlongnoncodingrnasinmetabolicmemoryinducedbyhighglucoseinhumanumbilicalveinendothelialcells
AT huanganqi profileanalysisofdifferentiallyexpressedlongnoncodingrnasinmetabolicmemoryinducedbyhighglucoseinhumanumbilicalveinendothelialcells
AT chengji profileanalysisofdifferentiallyexpressedlongnoncodingrnasinmetabolicmemoryinducedbyhighglucoseinhumanumbilicalveinendothelialcells
AT peixiaoyan profileanalysisofdifferentiallyexpressedlongnoncodingrnasinmetabolicmemoryinducedbyhighglucoseinhumanumbilicalveinendothelialcells
AT yulei profileanalysisofdifferentiallyexpressedlongnoncodingrnasinmetabolicmemoryinducedbyhighglucoseinhumanumbilicalveinendothelialcells
AT jinguoxi profileanalysisofdifferentiallyexpressedlongnoncodingrnasinmetabolicmemoryinducedbyhighglucoseinhumanumbilicalveinendothelialcells
AT xuerqin profileanalysisofdifferentiallyexpressedlongnoncodingrnasinmetabolicmemoryinducedbyhighglucoseinhumanumbilicalveinendothelialcells