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The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease
Increasing evidences have demonstrated that pyroptosis exerts key roles in the occurrence, development of chronic obstructive pulmonary disease. However, the mechanisms of pyroptosis in COPD remain largely unknown. In our research, Statistics were performed using R software and related packages in t...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10190106/ https://www.ncbi.nlm.nih.gov/pubmed/37194062 http://dx.doi.org/10.1186/s12890-023-02408-5 |
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author | Liu, Xinlong Huang, Xiaoling Xu, Feng |
author_facet | Liu, Xinlong Huang, Xiaoling Xu, Feng |
author_sort | Liu, Xinlong |
collection | PubMed |
description | Increasing evidences have demonstrated that pyroptosis exerts key roles in the occurrence, development of chronic obstructive pulmonary disease. However, the mechanisms of pyroptosis in COPD remain largely unknown. In our research, Statistics were performed using R software and related packages in this study. Series matrix files of small airway epithelium samples were downloaded from the GEO database. Differential expression analysis with FDR < 0.05 was performed to identify COPD-associated pyroptosis-related genes. 8 up-regulated genes (CASP4, CASP5, CHMP7, GZMB, IL1B, AIM2, CASP6, GSDMC) and 1 down-regulated genes (PLCG1) was identified as COPD-associated pyroptosis-related genes. Twenty-six COPD key genes was identified by WGCNA analysis. PPI analysis and gene correlation analysis showed their relationship clearly. KEGG and GO analysis have revealed the main pyroptosis-related mechanism of COPD. The expression of 9 COPD-associated pyroptosis-related genes in different grades was also depicted. The immune environment of COPD was also explored. Furthermore, the relationship of pyroptosis-related genes and the expression of immune cells was also be shown in the end. In the end, we concluded that pyroptosis influences the development of COPD. This study may provide new insight into the novel therapeutic targets for COPD clinical treatment. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12890-023-02408-5. |
format | Online Article Text |
id | pubmed-10190106 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-101901062023-05-18 The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease Liu, Xinlong Huang, Xiaoling Xu, Feng BMC Pulm Med Research Increasing evidences have demonstrated that pyroptosis exerts key roles in the occurrence, development of chronic obstructive pulmonary disease. However, the mechanisms of pyroptosis in COPD remain largely unknown. In our research, Statistics were performed using R software and related packages in this study. Series matrix files of small airway epithelium samples were downloaded from the GEO database. Differential expression analysis with FDR < 0.05 was performed to identify COPD-associated pyroptosis-related genes. 8 up-regulated genes (CASP4, CASP5, CHMP7, GZMB, IL1B, AIM2, CASP6, GSDMC) and 1 down-regulated genes (PLCG1) was identified as COPD-associated pyroptosis-related genes. Twenty-six COPD key genes was identified by WGCNA analysis. PPI analysis and gene correlation analysis showed their relationship clearly. KEGG and GO analysis have revealed the main pyroptosis-related mechanism of COPD. The expression of 9 COPD-associated pyroptosis-related genes in different grades was also depicted. The immune environment of COPD was also explored. Furthermore, the relationship of pyroptosis-related genes and the expression of immune cells was also be shown in the end. In the end, we concluded that pyroptosis influences the development of COPD. This study may provide new insight into the novel therapeutic targets for COPD clinical treatment. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12890-023-02408-5. BioMed Central 2023-05-17 /pmc/articles/PMC10190106/ /pubmed/37194062 http://dx.doi.org/10.1186/s12890-023-02408-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Liu, Xinlong Huang, Xiaoling Xu, Feng The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease |
title | The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease |
title_full | The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease |
title_fullStr | The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease |
title_full_unstemmed | The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease |
title_short | The influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease |
title_sort | influence of pyroptosis-related genes on the development of chronic obstructive pulmonary disease |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10190106/ https://www.ncbi.nlm.nih.gov/pubmed/37194062 http://dx.doi.org/10.1186/s12890-023-02408-5 |
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