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Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression

Chronic hepatitis B (CHB) is a major public health problem in the world. It is the main cause of liver cirrhosis and liver cancer. Although many important roles of RNA modification in stem cells or tumor diseases have been identified, the role of N7-methylguanosine (m7G) modification in the process...

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Autores principales: Zhang, Rongzheng, Xia, Yan, Dong, Jianming, Ju, Xiaomei, Zhou, Kun, Cao, Xinyang, Li, Jiaqi, Ru, Jiaqiu, Guo, Mengrui, Zhang, Shuyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191754/
https://www.ncbi.nlm.nih.gov/pubmed/37206976
http://dx.doi.org/10.1155/2023/9471520
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author Zhang, Rongzheng
Xia, Yan
Dong, Jianming
Ju, Xiaomei
Zhou, Kun
Cao, Xinyang
Li, Jiaqi
Ru, Jiaqiu
Guo, Mengrui
Zhang, Shuyun
author_facet Zhang, Rongzheng
Xia, Yan
Dong, Jianming
Ju, Xiaomei
Zhou, Kun
Cao, Xinyang
Li, Jiaqi
Ru, Jiaqiu
Guo, Mengrui
Zhang, Shuyun
author_sort Zhang, Rongzheng
collection PubMed
description Chronic hepatitis B (CHB) is a major public health problem in the world. It is the main cause of liver cirrhosis and liver cancer. Although many important roles of RNA modification in stem cells or tumor diseases have been identified, the role of N7-methylguanosine (m7G) modification in the process of chronic HBV infection has not been clearly defined. Therefore, we conducted a systematic analysis on the process of chronic HBV infection. We found that a total of 18 m7G-related genes were altered in chronic HBV infection, and then we screened out CHB potential diagnostic biomarkers using machine learning and random forest methods. RT-qPCR was performed on the samples of healthy people and CHB, which further verified the possibility of being a diagnostic marker. Then, we typed CHB patients based on these 18 genes. We found that the immune microenvironment of different subtypes was different. Among them, patients with subtype-Ⅰ had severe immune response, that is, relatively serious immune cell infiltration, rich immune pathways, relatively many HLA genes, and immune checkpoints. Finally, we conducted an in-depth discussion on our m7G-related genes, and found that m7G gene related to immune cell infiltration may be involved in the disease progression of CHB patients, which was also confirmed in the GSE84044 dataset. In conclusion, m7G-related genes can not only serve as diagnostic markers of CHB, but also participate in the regulation of immune microenvironment and play an important role in the progression of CHB.
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spelling pubmed-101917542023-05-18 Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression Zhang, Rongzheng Xia, Yan Dong, Jianming Ju, Xiaomei Zhou, Kun Cao, Xinyang Li, Jiaqi Ru, Jiaqiu Guo, Mengrui Zhang, Shuyun J Immunol Res Research Article Chronic hepatitis B (CHB) is a major public health problem in the world. It is the main cause of liver cirrhosis and liver cancer. Although many important roles of RNA modification in stem cells or tumor diseases have been identified, the role of N7-methylguanosine (m7G) modification in the process of chronic HBV infection has not been clearly defined. Therefore, we conducted a systematic analysis on the process of chronic HBV infection. We found that a total of 18 m7G-related genes were altered in chronic HBV infection, and then we screened out CHB potential diagnostic biomarkers using machine learning and random forest methods. RT-qPCR was performed on the samples of healthy people and CHB, which further verified the possibility of being a diagnostic marker. Then, we typed CHB patients based on these 18 genes. We found that the immune microenvironment of different subtypes was different. Among them, patients with subtype-Ⅰ had severe immune response, that is, relatively serious immune cell infiltration, rich immune pathways, relatively many HLA genes, and immune checkpoints. Finally, we conducted an in-depth discussion on our m7G-related genes, and found that m7G gene related to immune cell infiltration may be involved in the disease progression of CHB patients, which was also confirmed in the GSE84044 dataset. In conclusion, m7G-related genes can not only serve as diagnostic markers of CHB, but also participate in the regulation of immune microenvironment and play an important role in the progression of CHB. Hindawi 2023-05-10 /pmc/articles/PMC10191754/ /pubmed/37206976 http://dx.doi.org/10.1155/2023/9471520 Text en Copyright © 2023 Rongzheng Zhang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhang, Rongzheng
Xia, Yan
Dong, Jianming
Ju, Xiaomei
Zhou, Kun
Cao, Xinyang
Li, Jiaqi
Ru, Jiaqiu
Guo, Mengrui
Zhang, Shuyun
Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression
title Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression
title_full Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression
title_fullStr Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression
title_full_unstemmed Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression
title_short Comprehensive Analysis of m7G-Related Genes and Chronic Hepatitis B: Diagnostic Markers, Immune Microenvironment Regulation, Disease Progression
title_sort comprehensive analysis of m7g-related genes and chronic hepatitis b: diagnostic markers, immune microenvironment regulation, disease progression
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191754/
https://www.ncbi.nlm.nih.gov/pubmed/37206976
http://dx.doi.org/10.1155/2023/9471520
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