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Supervised versus unsupervised approaches to classification of accelerometry data

Sophisticated animal‐borne sensor systems are increasingly providing novel insight into how animals behave and move. Despite their widespread use in ecology, the diversity and expanding quality and quantity of data they produce have created a need for robust analytical methods for biological interpr...

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Autores principales: Sur, Maitreyi, Hall, Jonathan C., Brandt, Joseph, Astell, Molly, Poessel, Sharon A., Katzner, Todd E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191777/
https://www.ncbi.nlm.nih.gov/pubmed/37206689
http://dx.doi.org/10.1002/ece3.10035
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author Sur, Maitreyi
Hall, Jonathan C.
Brandt, Joseph
Astell, Molly
Poessel, Sharon A.
Katzner, Todd E.
author_facet Sur, Maitreyi
Hall, Jonathan C.
Brandt, Joseph
Astell, Molly
Poessel, Sharon A.
Katzner, Todd E.
author_sort Sur, Maitreyi
collection PubMed
description Sophisticated animal‐borne sensor systems are increasingly providing novel insight into how animals behave and move. Despite their widespread use in ecology, the diversity and expanding quality and quantity of data they produce have created a need for robust analytical methods for biological interpretation. Machine learning tools are often used to meet this need. However, their relative effectiveness is not well known and, in the case of unsupervised tools, given that they do not use validation data, their accuracy can be difficult to assess. We evaluated the effectiveness of supervised (n = 6), semi‐supervised (n = 1), and unsupervised (n = 2) approaches to analyzing accelerometry data collected from critically endangered California condors (Gymnogyps californianus). Unsupervised K‐means and EM (expectation–maximization) clustering approaches performed poorly, with adequate classification accuracies of <0.8 but very low values for kappa statistics (range: −0.02 to 0.06). The semi‐supervised nearest mean classifier was moderately effective at classification, with an overall classification accuracy of 0.61 but effective classification only of two of the four behavioral classes. Supervised random forest (RF) and k‐nearest neighbor (kNN) machine learning models were most effective at classification across all behavior types, with overall accuracies >0.81. Kappa statistics were also highest for RF and kNN, in most cases substantially greater than for other modeling approaches. Unsupervised modeling, which is commonly used for the classification of a priori‐defined behaviors in telemetry data, can provide useful information but likely is instead better suited to post hoc definition of generalized behavioral states. This work also shows the potential for substantial variation in classification accuracy among different machine learning approaches and among different metrics of accuracy. As such, when analyzing biotelemetry data, best practices appear to call for the evaluation of several machine learning techniques and several measures of accuracy for each dataset under consideration.
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spelling pubmed-101917772023-05-18 Supervised versus unsupervised approaches to classification of accelerometry data Sur, Maitreyi Hall, Jonathan C. Brandt, Joseph Astell, Molly Poessel, Sharon A. Katzner, Todd E. Ecol Evol Research Articles Sophisticated animal‐borne sensor systems are increasingly providing novel insight into how animals behave and move. Despite their widespread use in ecology, the diversity and expanding quality and quantity of data they produce have created a need for robust analytical methods for biological interpretation. Machine learning tools are often used to meet this need. However, their relative effectiveness is not well known and, in the case of unsupervised tools, given that they do not use validation data, their accuracy can be difficult to assess. We evaluated the effectiveness of supervised (n = 6), semi‐supervised (n = 1), and unsupervised (n = 2) approaches to analyzing accelerometry data collected from critically endangered California condors (Gymnogyps californianus). Unsupervised K‐means and EM (expectation–maximization) clustering approaches performed poorly, with adequate classification accuracies of <0.8 but very low values for kappa statistics (range: −0.02 to 0.06). The semi‐supervised nearest mean classifier was moderately effective at classification, with an overall classification accuracy of 0.61 but effective classification only of two of the four behavioral classes. Supervised random forest (RF) and k‐nearest neighbor (kNN) machine learning models were most effective at classification across all behavior types, with overall accuracies >0.81. Kappa statistics were also highest for RF and kNN, in most cases substantially greater than for other modeling approaches. Unsupervised modeling, which is commonly used for the classification of a priori‐defined behaviors in telemetry data, can provide useful information but likely is instead better suited to post hoc definition of generalized behavioral states. This work also shows the potential for substantial variation in classification accuracy among different machine learning approaches and among different metrics of accuracy. As such, when analyzing biotelemetry data, best practices appear to call for the evaluation of several machine learning techniques and several measures of accuracy for each dataset under consideration. John Wiley and Sons Inc. 2023-05-17 /pmc/articles/PMC10191777/ /pubmed/37206689 http://dx.doi.org/10.1002/ece3.10035 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Sur, Maitreyi
Hall, Jonathan C.
Brandt, Joseph
Astell, Molly
Poessel, Sharon A.
Katzner, Todd E.
Supervised versus unsupervised approaches to classification of accelerometry data
title Supervised versus unsupervised approaches to classification of accelerometry data
title_full Supervised versus unsupervised approaches to classification of accelerometry data
title_fullStr Supervised versus unsupervised approaches to classification of accelerometry data
title_full_unstemmed Supervised versus unsupervised approaches to classification of accelerometry data
title_short Supervised versus unsupervised approaches to classification of accelerometry data
title_sort supervised versus unsupervised approaches to classification of accelerometry data
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191777/
https://www.ncbi.nlm.nih.gov/pubmed/37206689
http://dx.doi.org/10.1002/ece3.10035
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