Cargando…

A biomarker discovery of acute myocardial infarction using feature selection and machine learning

Acute myocardial infarction (AMI) or heart attack is a significant global health threat and one of the leading causes of death. The evolution of machine learning has greatly revamped the risk stratification and death prediction of AMI. In this study, an integrated feature selection and machine learn...

Descripción completa

Detalles Bibliográficos
Autores principales: Mohd Faizal, Aizatul Shafiqah, Hon, Wei Yin, Thevarajah, T. Malathi, Khor, Sook Mei, Chang, Siow-Wee
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191821/
https://www.ncbi.nlm.nih.gov/pubmed/37199891
http://dx.doi.org/10.1007/s11517-023-02841-y
_version_ 1785043534377648128
author Mohd Faizal, Aizatul Shafiqah
Hon, Wei Yin
Thevarajah, T. Malathi
Khor, Sook Mei
Chang, Siow-Wee
author_facet Mohd Faizal, Aizatul Shafiqah
Hon, Wei Yin
Thevarajah, T. Malathi
Khor, Sook Mei
Chang, Siow-Wee
author_sort Mohd Faizal, Aizatul Shafiqah
collection PubMed
description Acute myocardial infarction (AMI) or heart attack is a significant global health threat and one of the leading causes of death. The evolution of machine learning has greatly revamped the risk stratification and death prediction of AMI. In this study, an integrated feature selection and machine learning approach was used to identify potential biomarkers for early detection and treatment of AMI. First, feature selection was conducted and evaluated before all classification tasks with machine learning. Full classification models (using all 62 features) and reduced classification models (using various feature selection methods ranging from 5 to 30 features) were built and evaluated using six machine learning classification algorithms. The results showed that the reduced models performed generally better (mean AUPRC via random forest (RF) algorithm for recursive feature elimination (RFE) method ranges from 0.8048 to 0.8260, while for random forest importance (RFI) method, it ranges from 0.8301 to 0.8505) than the full models (mean AUPRC via RF: 0.8044). The most notable finding of this study was the identification of a five-feature model that included cardiac troponin I, HDL cholesterol, HbA1c, anion gap, and albumin, which had achieved comparable results (mean AUPRC via RF: 0.8462) as to the models that containing more features. These five features were proven by the previous studies as significant risk factors for AMI or cardiovascular disease and could be used as potential biomarkers to predict the prognosis of AMI patients. From the medical point of view, fewer features for diagnosis or prognosis could reduce the cost and time of a patient as lesser clinical and pathological tests are needed. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11517-023-02841-y.
format Online
Article
Text
id pubmed-10191821
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-101918212023-05-19 A biomarker discovery of acute myocardial infarction using feature selection and machine learning Mohd Faizal, Aizatul Shafiqah Hon, Wei Yin Thevarajah, T. Malathi Khor, Sook Mei Chang, Siow-Wee Med Biol Eng Comput Original Article Acute myocardial infarction (AMI) or heart attack is a significant global health threat and one of the leading causes of death. The evolution of machine learning has greatly revamped the risk stratification and death prediction of AMI. In this study, an integrated feature selection and machine learning approach was used to identify potential biomarkers for early detection and treatment of AMI. First, feature selection was conducted and evaluated before all classification tasks with machine learning. Full classification models (using all 62 features) and reduced classification models (using various feature selection methods ranging from 5 to 30 features) were built and evaluated using six machine learning classification algorithms. The results showed that the reduced models performed generally better (mean AUPRC via random forest (RF) algorithm for recursive feature elimination (RFE) method ranges from 0.8048 to 0.8260, while for random forest importance (RFI) method, it ranges from 0.8301 to 0.8505) than the full models (mean AUPRC via RF: 0.8044). The most notable finding of this study was the identification of a five-feature model that included cardiac troponin I, HDL cholesterol, HbA1c, anion gap, and albumin, which had achieved comparable results (mean AUPRC via RF: 0.8462) as to the models that containing more features. These five features were proven by the previous studies as significant risk factors for AMI or cardiovascular disease and could be used as potential biomarkers to predict the prognosis of AMI patients. From the medical point of view, fewer features for diagnosis or prognosis could reduce the cost and time of a patient as lesser clinical and pathological tests are needed. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11517-023-02841-y. Springer Berlin Heidelberg 2023-05-18 /pmc/articles/PMC10191821/ /pubmed/37199891 http://dx.doi.org/10.1007/s11517-023-02841-y Text en © International Federation for Medical and Biological Engineering 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Mohd Faizal, Aizatul Shafiqah
Hon, Wei Yin
Thevarajah, T. Malathi
Khor, Sook Mei
Chang, Siow-Wee
A biomarker discovery of acute myocardial infarction using feature selection and machine learning
title A biomarker discovery of acute myocardial infarction using feature selection and machine learning
title_full A biomarker discovery of acute myocardial infarction using feature selection and machine learning
title_fullStr A biomarker discovery of acute myocardial infarction using feature selection and machine learning
title_full_unstemmed A biomarker discovery of acute myocardial infarction using feature selection and machine learning
title_short A biomarker discovery of acute myocardial infarction using feature selection and machine learning
title_sort biomarker discovery of acute myocardial infarction using feature selection and machine learning
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10191821/
https://www.ncbi.nlm.nih.gov/pubmed/37199891
http://dx.doi.org/10.1007/s11517-023-02841-y
work_keys_str_mv AT mohdfaizalaizatulshafiqah abiomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT honweiyin abiomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT thevarajahtmalathi abiomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT khorsookmei abiomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT changsiowwee abiomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT mohdfaizalaizatulshafiqah biomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT honweiyin biomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT thevarajahtmalathi biomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT khorsookmei biomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning
AT changsiowwee biomarkerdiscoveryofacutemyocardialinfarctionusingfeatureselectionandmachinelearning