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Detecting anomalies from liquid transfer videos in automated laboratory setting

In this work, we address the problem of detecting anomalies in a certain laboratory automation setting. At first, we collect video images of liquid transfer in automated laboratory experiments. We mimic the real-world challenges of developing an anomaly detection model by considering two points. Fir...

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Autores principales: Sarker, Najibul Haque, Hakim, Zaber Abdul, Dabouei, Ali, Uddin, Mostofa Rafid, Freyberg, Zachary, MacWilliams, Andy, Kangas, Joshua, Xu, Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10192699/
https://www.ncbi.nlm.nih.gov/pubmed/37214339
http://dx.doi.org/10.3389/fmolb.2023.1147514
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author Sarker, Najibul Haque
Hakim, Zaber Abdul
Dabouei, Ali
Uddin, Mostofa Rafid
Freyberg, Zachary
MacWilliams, Andy
Kangas, Joshua
Xu, Min
author_facet Sarker, Najibul Haque
Hakim, Zaber Abdul
Dabouei, Ali
Uddin, Mostofa Rafid
Freyberg, Zachary
MacWilliams, Andy
Kangas, Joshua
Xu, Min
author_sort Sarker, Najibul Haque
collection PubMed
description In this work, we address the problem of detecting anomalies in a certain laboratory automation setting. At first, we collect video images of liquid transfer in automated laboratory experiments. We mimic the real-world challenges of developing an anomaly detection model by considering two points. First, the size of the collected dataset is set to be relatively small compared to large-scale video datasets. Second, the dataset has a class imbalance problem where the majority of the collected videos are from abnormal events. Consequently, the existing learning-based video anomaly detection methods do not perform well. To this end, we develop a practical human-engineered feature extraction method to detect anomalies from the liquid transfer video images. Our simple yet effective method outperforms state-of-the-art anomaly detection methods with a notable margin. In particular, the proposed method provides 19% and 76% average improvement in AUC and Equal Error Rate, respectively. Our method also quantifies the anomalies and provides significant benefits for deployment in the real-world experimental setting.
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spelling pubmed-101926992023-05-19 Detecting anomalies from liquid transfer videos in automated laboratory setting Sarker, Najibul Haque Hakim, Zaber Abdul Dabouei, Ali Uddin, Mostofa Rafid Freyberg, Zachary MacWilliams, Andy Kangas, Joshua Xu, Min Front Mol Biosci Molecular Biosciences In this work, we address the problem of detecting anomalies in a certain laboratory automation setting. At first, we collect video images of liquid transfer in automated laboratory experiments. We mimic the real-world challenges of developing an anomaly detection model by considering two points. First, the size of the collected dataset is set to be relatively small compared to large-scale video datasets. Second, the dataset has a class imbalance problem where the majority of the collected videos are from abnormal events. Consequently, the existing learning-based video anomaly detection methods do not perform well. To this end, we develop a practical human-engineered feature extraction method to detect anomalies from the liquid transfer video images. Our simple yet effective method outperforms state-of-the-art anomaly detection methods with a notable margin. In particular, the proposed method provides 19% and 76% average improvement in AUC and Equal Error Rate, respectively. Our method also quantifies the anomalies and provides significant benefits for deployment in the real-world experimental setting. Frontiers Media S.A. 2023-05-04 /pmc/articles/PMC10192699/ /pubmed/37214339 http://dx.doi.org/10.3389/fmolb.2023.1147514 Text en Copyright © 2023 Sarker, Hakim, Dabouei, Uddin, Freyberg, MacWilliams, Kangas and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Sarker, Najibul Haque
Hakim, Zaber Abdul
Dabouei, Ali
Uddin, Mostofa Rafid
Freyberg, Zachary
MacWilliams, Andy
Kangas, Joshua
Xu, Min
Detecting anomalies from liquid transfer videos in automated laboratory setting
title Detecting anomalies from liquid transfer videos in automated laboratory setting
title_full Detecting anomalies from liquid transfer videos in automated laboratory setting
title_fullStr Detecting anomalies from liquid transfer videos in automated laboratory setting
title_full_unstemmed Detecting anomalies from liquid transfer videos in automated laboratory setting
title_short Detecting anomalies from liquid transfer videos in automated laboratory setting
title_sort detecting anomalies from liquid transfer videos in automated laboratory setting
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10192699/
https://www.ncbi.nlm.nih.gov/pubmed/37214339
http://dx.doi.org/10.3389/fmolb.2023.1147514
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