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Detecting anomalies from liquid transfer videos in automated laboratory setting
In this work, we address the problem of detecting anomalies in a certain laboratory automation setting. At first, we collect video images of liquid transfer in automated laboratory experiments. We mimic the real-world challenges of developing an anomaly detection model by considering two points. Fir...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10192699/ https://www.ncbi.nlm.nih.gov/pubmed/37214339 http://dx.doi.org/10.3389/fmolb.2023.1147514 |
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author | Sarker, Najibul Haque Hakim, Zaber Abdul Dabouei, Ali Uddin, Mostofa Rafid Freyberg, Zachary MacWilliams, Andy Kangas, Joshua Xu, Min |
author_facet | Sarker, Najibul Haque Hakim, Zaber Abdul Dabouei, Ali Uddin, Mostofa Rafid Freyberg, Zachary MacWilliams, Andy Kangas, Joshua Xu, Min |
author_sort | Sarker, Najibul Haque |
collection | PubMed |
description | In this work, we address the problem of detecting anomalies in a certain laboratory automation setting. At first, we collect video images of liquid transfer in automated laboratory experiments. We mimic the real-world challenges of developing an anomaly detection model by considering two points. First, the size of the collected dataset is set to be relatively small compared to large-scale video datasets. Second, the dataset has a class imbalance problem where the majority of the collected videos are from abnormal events. Consequently, the existing learning-based video anomaly detection methods do not perform well. To this end, we develop a practical human-engineered feature extraction method to detect anomalies from the liquid transfer video images. Our simple yet effective method outperforms state-of-the-art anomaly detection methods with a notable margin. In particular, the proposed method provides 19% and 76% average improvement in AUC and Equal Error Rate, respectively. Our method also quantifies the anomalies and provides significant benefits for deployment in the real-world experimental setting. |
format | Online Article Text |
id | pubmed-10192699 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-101926992023-05-19 Detecting anomalies from liquid transfer videos in automated laboratory setting Sarker, Najibul Haque Hakim, Zaber Abdul Dabouei, Ali Uddin, Mostofa Rafid Freyberg, Zachary MacWilliams, Andy Kangas, Joshua Xu, Min Front Mol Biosci Molecular Biosciences In this work, we address the problem of detecting anomalies in a certain laboratory automation setting. At first, we collect video images of liquid transfer in automated laboratory experiments. We mimic the real-world challenges of developing an anomaly detection model by considering two points. First, the size of the collected dataset is set to be relatively small compared to large-scale video datasets. Second, the dataset has a class imbalance problem where the majority of the collected videos are from abnormal events. Consequently, the existing learning-based video anomaly detection methods do not perform well. To this end, we develop a practical human-engineered feature extraction method to detect anomalies from the liquid transfer video images. Our simple yet effective method outperforms state-of-the-art anomaly detection methods with a notable margin. In particular, the proposed method provides 19% and 76% average improvement in AUC and Equal Error Rate, respectively. Our method also quantifies the anomalies and provides significant benefits for deployment in the real-world experimental setting. Frontiers Media S.A. 2023-05-04 /pmc/articles/PMC10192699/ /pubmed/37214339 http://dx.doi.org/10.3389/fmolb.2023.1147514 Text en Copyright © 2023 Sarker, Hakim, Dabouei, Uddin, Freyberg, MacWilliams, Kangas and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Sarker, Najibul Haque Hakim, Zaber Abdul Dabouei, Ali Uddin, Mostofa Rafid Freyberg, Zachary MacWilliams, Andy Kangas, Joshua Xu, Min Detecting anomalies from liquid transfer videos in automated laboratory setting |
title | Detecting anomalies from liquid transfer videos in automated laboratory setting |
title_full | Detecting anomalies from liquid transfer videos in automated laboratory setting |
title_fullStr | Detecting anomalies from liquid transfer videos in automated laboratory setting |
title_full_unstemmed | Detecting anomalies from liquid transfer videos in automated laboratory setting |
title_short | Detecting anomalies from liquid transfer videos in automated laboratory setting |
title_sort | detecting anomalies from liquid transfer videos in automated laboratory setting |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10192699/ https://www.ncbi.nlm.nih.gov/pubmed/37214339 http://dx.doi.org/10.3389/fmolb.2023.1147514 |
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