Cargando…

Evaluation of genetic demultiplexing of single-cell sequencing data from model species

Single-cell sequencing (sc-seq) provides a species agnostic tool to study cellular processes. However, these technologies are expensive and require sufficient cell quantities and biological replicates to avoid artifactual results. An option to address these problems is pooling cells from multiple in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cardiello, Joseph F, Joven Araus, Alberto, Giatrellis, Sarantis, Helsens, Clement, Simon, András, Leigh, Nicholas D
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Life Science Alliance LLC 2023
Materias:	Methods
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10192724/ https://www.ncbi.nlm.nih.gov/pubmed/37197983 http://dx.doi.org/10.26508/lsa.202301979

Ejemplares similares

Genotype-free demultiplexing of pooled single-cell RNA-seq
por: Xu, Jun, et al.
Publicado: (2019)

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference
por: Huang, Yuanhua, et al.
Publicado: (2019)

scDemultiplex: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos
por: Huang, Li-Ching, et al.
Publicado: (2023)

GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing
por: Xin, Hongyi, et al.
Publicado: (2020)

Benchmarking single-cell hashtag oligo demultiplexing methods
por: Howitt, George, et al.
Publicado: (2023)

HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing
por: Han, Renmin, et al.
Publicado: (2023)

deMULTIplex2: robust sample demultiplexing for scRNA-seq
por: Zhu, Qin, et al.
Publicado: (2023)

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
por: Weber, Lukas M, et al.
Publicado: (2021)

Nucleic acid-lipid membrane interactions studied by DSC
por: Giatrellis, Sarantis, et al.
Publicado: (2011)

demuxmix: Demultiplexing oligonucleotide-barcoded single-cell RNA sequencing data with regression mixture models
por: Klein, Hans-Ulrich
Publicado: (2023)

demuxmix: demultiplexing oligonucleotide-barcoded single-cell RNA sequencing data with regression mixture models
por: Klein, Hans-Ulrich
Publicado: (2023)

Pathoscope: Species identification and strain attribution with unassembled sequencing data
por: Francis, Owen E., et al.
Publicado: (2013)

Fuzzysplit: demultiplexing and trimming sequenced DNA with a declarative language
por: Liu, Daniel
Publicado: (2019)

Molecular demultiplexer as a terminator automaton
por: Turan, Ilke S., et al.
Publicado: (2018)

Reverse Design of On-Chip Terahertz Demultiplexers
por: Zhu, Guofeng, et al.
Publicado: (2021)

Frequency-division multiplexer and demultiplexer for terahertz wireless links
por: Ma, Jianjun, et al.
Publicado: (2017)

GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
por: Herten, Koen, et al.
Publicado: (2015)

Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning
por: Papetti, Daniele M., et al.
Publicado: (2023)

Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer
por: Wilkins, Oscar G, et al.
Publicado: (2021)

Spectral Demultiplexing in Holographic and Fluorescent On-chip Microscopy
por: Sencan, Ikbal, et al.
Publicado: (2014)

SNES: single nucleus exome sequencing
por: Leung, Marco L, et al.
Publicado: (2015)

DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
por: Zhou, Zilu, et al.
Publicado: (2020)

Predicting the impact of sequence motifs on gene regulation using single-cell data
por: Hepkema, Jacob, et al.
Publicado: (2023)

Bayesian Inference of Species Networks from Multilocus Sequence Data
por: Zhang, Chi, et al.
Publicado: (2018)

deML: robust demultiplexing of Illumina sequences using a likelihood-based approach
por: Renaud, Gabriel, et al.
Publicado: (2015)

Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries
por: Li, Weiyi, et al.
Publicado: (2023)

Splatter: simulation of single-cell RNA sequencing data
por: Zappia, Luke, et al.
Publicado: (2017)

scSNPdemux: a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis
por: Wong, John K. L., et al.
Publicado: (2023)

SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models
por: Zafar, Hamim, et al.
Publicado: (2017)

MultiK: an automated tool to determine optimal cluster numbers in single-cell RNA sequencing data
por: Liu, Siyao, et al.
Publicado: (2021)

Cobolt: integrative analysis of multimodal single-cell sequencing data
por: Gong, Boying, et al.
Publicado: (2021)

SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data
por: Zafar, Hamim, et al.
Publicado: (2019)

Simultaneous demultiplexing and steering of multiple orbital angular momentum modes
por: Li, Shuhui, et al.
Publicado: (2015)

Inverse design and implementation of a wavelength demultiplexing grating coupler
por: Piggott, Alexander Y., et al.
Publicado: (2014)

An 8-Channel Wavelength MMI Demultiplexer in Slot Waveguide Structures
por: Ben Zaken, Bar Baruch, et al.
Publicado: (2016)

Low-Temperature Characteristics of Nanowire Network Demultiplexer for Qubit Biasing
por: Södergren, Lasse, et al.
Publicado: (2022)

Design of the Bimodal Grating Sensor with a Built-In Mode Demultiplexer
por: Tsarev, Andrei
Publicado: (2023)

deCS: A Tool for Systematic Cell Type Annotations of Single-cell RNA Sequencing Data among Human Tissues
por: Pei, Guangsheng, et al.
Publicado: (2023)

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data
por: Kang, Senbai, et al.
Publicado: (2022)

OncoNEM: inferring tumor evolution from single-cell sequencing data
por: Ross, Edith M., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_euhh5o0hb0h77fd5fonih31mcn