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Time-aware neural ordinary differential equations for incomplete time series modeling
Internet of Things realizes the ubiquitous connection of all things, generating countless time-tagged data called time series. However, real-world time series are often plagued with missing values on account of noise or malfunctioning sensors. Existing methods for modeling such incomplete time serie...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10192786/ https://www.ncbi.nlm.nih.gov/pubmed/37359342 http://dx.doi.org/10.1007/s11227-023-05327-8 |
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author | Chang, Zhuoqing Liu, Shubo Qiu, Run Song, Song Cai, Zhaohui Tu, Guoqing |
author_facet | Chang, Zhuoqing Liu, Shubo Qiu, Run Song, Song Cai, Zhaohui Tu, Guoqing |
author_sort | Chang, Zhuoqing |
collection | PubMed |
description | Internet of Things realizes the ubiquitous connection of all things, generating countless time-tagged data called time series. However, real-world time series are often plagued with missing values on account of noise or malfunctioning sensors. Existing methods for modeling such incomplete time series typically involve preprocessing steps, such as deletion or missing data imputation using statistical learning or machine learning methods. Unfortunately, these methods unavoidable destroy time information and bring error accumulation to the subsequent model. To this end, this paper introduces a novel continuous neural network architecture, named Time-aware Neural-Ordinary Differential Equations (TN-ODE), for incomplete time data modeling. The proposed method not only supports imputation missing values at arbitrary time points, but also enables multi-step prediction at desired time points. Specifically, TN-ODE employs a time-aware Long Short-Term Memory as an encoder, which effectively learns the posterior distribution from partial observed data. Additionally, the derivative of latent states is parameterized with a fully connected network, thereby enabling continuous-time latent dynamics generation. The proposed TN-ODE model is evaluated on both real-world and synthetic incomplete time-series datasets by conducting data interpolation and extrapolation tasks as well as classification task. Extensive experiments show the TN-ODE model outperforms baseline methods in terms of Mean Square Error for imputation and prediction tasks, as well as accuracy in downstream classification task. |
format | Online Article Text |
id | pubmed-10192786 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-101927862023-05-19 Time-aware neural ordinary differential equations for incomplete time series modeling Chang, Zhuoqing Liu, Shubo Qiu, Run Song, Song Cai, Zhaohui Tu, Guoqing J Supercomput Article Internet of Things realizes the ubiquitous connection of all things, generating countless time-tagged data called time series. However, real-world time series are often plagued with missing values on account of noise or malfunctioning sensors. Existing methods for modeling such incomplete time series typically involve preprocessing steps, such as deletion or missing data imputation using statistical learning or machine learning methods. Unfortunately, these methods unavoidable destroy time information and bring error accumulation to the subsequent model. To this end, this paper introduces a novel continuous neural network architecture, named Time-aware Neural-Ordinary Differential Equations (TN-ODE), for incomplete time data modeling. The proposed method not only supports imputation missing values at arbitrary time points, but also enables multi-step prediction at desired time points. Specifically, TN-ODE employs a time-aware Long Short-Term Memory as an encoder, which effectively learns the posterior distribution from partial observed data. Additionally, the derivative of latent states is parameterized with a fully connected network, thereby enabling continuous-time latent dynamics generation. The proposed TN-ODE model is evaluated on both real-world and synthetic incomplete time-series datasets by conducting data interpolation and extrapolation tasks as well as classification task. Extensive experiments show the TN-ODE model outperforms baseline methods in terms of Mean Square Error for imputation and prediction tasks, as well as accuracy in downstream classification task. Springer US 2023-05-18 /pmc/articles/PMC10192786/ /pubmed/37359342 http://dx.doi.org/10.1007/s11227-023-05327-8 Text en © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Chang, Zhuoqing Liu, Shubo Qiu, Run Song, Song Cai, Zhaohui Tu, Guoqing Time-aware neural ordinary differential equations for incomplete time series modeling |
title | Time-aware neural ordinary differential equations for incomplete time series modeling |
title_full | Time-aware neural ordinary differential equations for incomplete time series modeling |
title_fullStr | Time-aware neural ordinary differential equations for incomplete time series modeling |
title_full_unstemmed | Time-aware neural ordinary differential equations for incomplete time series modeling |
title_short | Time-aware neural ordinary differential equations for incomplete time series modeling |
title_sort | time-aware neural ordinary differential equations for incomplete time series modeling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10192786/ https://www.ncbi.nlm.nih.gov/pubmed/37359342 http://dx.doi.org/10.1007/s11227-023-05327-8 |
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