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Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity

In this study, the genome of the lytic broad-host-range phage Key infecting Erwinia amylovora, Erwinia horticola, and Pantoea agglomerans strains was characterized. Key phage has a 115,651 bp long double-stranded DNA genome with the G + C ratio of 39.03%, encoding 182 proteins and 27 tRNA genes. The...

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Autores principales: Zlatohurska, Maryna, Gorb, Tetiana, Romaniuk, Liudmyla, Shenderovska, Natalia, Faidiuk, Yuliia, Zhuminska, Ganna, Hubar, Yuliia, Hubar, Oleksandr, Kropinski, Andrew M., Kushkina, Alla, Tovkach, Fedor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10194208/
https://www.ncbi.nlm.nih.gov/pubmed/36907559
http://dx.doi.org/10.1016/j.virusres.2023.199088
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author Zlatohurska, Maryna
Gorb, Tetiana
Romaniuk, Liudmyla
Shenderovska, Natalia
Faidiuk, Yuliia
Zhuminska, Ganna
Hubar, Yuliia
Hubar, Oleksandr
Kropinski, Andrew M.
Kushkina, Alla
Tovkach, Fedor
author_facet Zlatohurska, Maryna
Gorb, Tetiana
Romaniuk, Liudmyla
Shenderovska, Natalia
Faidiuk, Yuliia
Zhuminska, Ganna
Hubar, Yuliia
Hubar, Oleksandr
Kropinski, Andrew M.
Kushkina, Alla
Tovkach, Fedor
author_sort Zlatohurska, Maryna
collection PubMed
description In this study, the genome of the lytic broad-host-range phage Key infecting Erwinia amylovora, Erwinia horticola, and Pantoea agglomerans strains was characterized. Key phage has a 115,651 bp long double-stranded DNA genome with the G + C ratio of 39.03%, encoding 182 proteins and 27 tRNA genes. The majority (69%) of predicted coding sequences (CDSs) encode proteins with unknown functions. The protein products of 57 annotated genes were found to have probable functions in nucleotide metabolism, DNA replication, recombination, repair, and packaging, virion morphogenesis, phage-host interaction and lysis. Furthermore, the product of gene 141 shared amino acid sequence similarity and conserved domain architecture with the exopolysaccharide (EPS) degrading proteins of Erwinia and Pantoea infecting phages as well as bacterial EPS biosynthesis proteins. Due to the genome synteny and similarity to the proteins of T5-related phages, phage Key, together with its closest relative, Pantoea phage AAS21, was suggested to represent a novel genus within the Demerecviridae family, for which we tentatively propose the name “Keyvirus”.
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spelling pubmed-101942082023-05-19 Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity Zlatohurska, Maryna Gorb, Tetiana Romaniuk, Liudmyla Shenderovska, Natalia Faidiuk, Yuliia Zhuminska, Ganna Hubar, Yuliia Hubar, Oleksandr Kropinski, Andrew M. Kushkina, Alla Tovkach, Fedor Virus Res Article In this study, the genome of the lytic broad-host-range phage Key infecting Erwinia amylovora, Erwinia horticola, and Pantoea agglomerans strains was characterized. Key phage has a 115,651 bp long double-stranded DNA genome with the G + C ratio of 39.03%, encoding 182 proteins and 27 tRNA genes. The majority (69%) of predicted coding sequences (CDSs) encode proteins with unknown functions. The protein products of 57 annotated genes were found to have probable functions in nucleotide metabolism, DNA replication, recombination, repair, and packaging, virion morphogenesis, phage-host interaction and lysis. Furthermore, the product of gene 141 shared amino acid sequence similarity and conserved domain architecture with the exopolysaccharide (EPS) degrading proteins of Erwinia and Pantoea infecting phages as well as bacterial EPS biosynthesis proteins. Due to the genome synteny and similarity to the proteins of T5-related phages, phage Key, together with its closest relative, Pantoea phage AAS21, was suggested to represent a novel genus within the Demerecviridae family, for which we tentatively propose the name “Keyvirus”. Elsevier 2023-03-21 /pmc/articles/PMC10194208/ /pubmed/36907559 http://dx.doi.org/10.1016/j.virusres.2023.199088 Text en © 2023 The Authors. Published by Elsevier B.V. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Zlatohurska, Maryna
Gorb, Tetiana
Romaniuk, Liudmyla
Shenderovska, Natalia
Faidiuk, Yuliia
Zhuminska, Ganna
Hubar, Yuliia
Hubar, Oleksandr
Kropinski, Andrew M.
Kushkina, Alla
Tovkach, Fedor
Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity
title Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity
title_full Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity
title_fullStr Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity
title_full_unstemmed Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity
title_short Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity
title_sort broad-host-range lytic erwinia phage key with exopolysaccharide degrading activity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10194208/
https://www.ncbi.nlm.nih.gov/pubmed/36907559
http://dx.doi.org/10.1016/j.virusres.2023.199088
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