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Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity
In this study, the genome of the lytic broad-host-range phage Key infecting Erwinia amylovora, Erwinia horticola, and Pantoea agglomerans strains was characterized. Key phage has a 115,651 bp long double-stranded DNA genome with the G + C ratio of 39.03%, encoding 182 proteins and 27 tRNA genes. The...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10194208/ https://www.ncbi.nlm.nih.gov/pubmed/36907559 http://dx.doi.org/10.1016/j.virusres.2023.199088 |
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author | Zlatohurska, Maryna Gorb, Tetiana Romaniuk, Liudmyla Shenderovska, Natalia Faidiuk, Yuliia Zhuminska, Ganna Hubar, Yuliia Hubar, Oleksandr Kropinski, Andrew M. Kushkina, Alla Tovkach, Fedor |
author_facet | Zlatohurska, Maryna Gorb, Tetiana Romaniuk, Liudmyla Shenderovska, Natalia Faidiuk, Yuliia Zhuminska, Ganna Hubar, Yuliia Hubar, Oleksandr Kropinski, Andrew M. Kushkina, Alla Tovkach, Fedor |
author_sort | Zlatohurska, Maryna |
collection | PubMed |
description | In this study, the genome of the lytic broad-host-range phage Key infecting Erwinia amylovora, Erwinia horticola, and Pantoea agglomerans strains was characterized. Key phage has a 115,651 bp long double-stranded DNA genome with the G + C ratio of 39.03%, encoding 182 proteins and 27 tRNA genes. The majority (69%) of predicted coding sequences (CDSs) encode proteins with unknown functions. The protein products of 57 annotated genes were found to have probable functions in nucleotide metabolism, DNA replication, recombination, repair, and packaging, virion morphogenesis, phage-host interaction and lysis. Furthermore, the product of gene 141 shared amino acid sequence similarity and conserved domain architecture with the exopolysaccharide (EPS) degrading proteins of Erwinia and Pantoea infecting phages as well as bacterial EPS biosynthesis proteins. Due to the genome synteny and similarity to the proteins of T5-related phages, phage Key, together with its closest relative, Pantoea phage AAS21, was suggested to represent a novel genus within the Demerecviridae family, for which we tentatively propose the name “Keyvirus”. |
format | Online Article Text |
id | pubmed-10194208 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-101942082023-05-19 Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity Zlatohurska, Maryna Gorb, Tetiana Romaniuk, Liudmyla Shenderovska, Natalia Faidiuk, Yuliia Zhuminska, Ganna Hubar, Yuliia Hubar, Oleksandr Kropinski, Andrew M. Kushkina, Alla Tovkach, Fedor Virus Res Article In this study, the genome of the lytic broad-host-range phage Key infecting Erwinia amylovora, Erwinia horticola, and Pantoea agglomerans strains was characterized. Key phage has a 115,651 bp long double-stranded DNA genome with the G + C ratio of 39.03%, encoding 182 proteins and 27 tRNA genes. The majority (69%) of predicted coding sequences (CDSs) encode proteins with unknown functions. The protein products of 57 annotated genes were found to have probable functions in nucleotide metabolism, DNA replication, recombination, repair, and packaging, virion morphogenesis, phage-host interaction and lysis. Furthermore, the product of gene 141 shared amino acid sequence similarity and conserved domain architecture with the exopolysaccharide (EPS) degrading proteins of Erwinia and Pantoea infecting phages as well as bacterial EPS biosynthesis proteins. Due to the genome synteny and similarity to the proteins of T5-related phages, phage Key, together with its closest relative, Pantoea phage AAS21, was suggested to represent a novel genus within the Demerecviridae family, for which we tentatively propose the name “Keyvirus”. Elsevier 2023-03-21 /pmc/articles/PMC10194208/ /pubmed/36907559 http://dx.doi.org/10.1016/j.virusres.2023.199088 Text en © 2023 The Authors. Published by Elsevier B.V. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Zlatohurska, Maryna Gorb, Tetiana Romaniuk, Liudmyla Shenderovska, Natalia Faidiuk, Yuliia Zhuminska, Ganna Hubar, Yuliia Hubar, Oleksandr Kropinski, Andrew M. Kushkina, Alla Tovkach, Fedor Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity |
title | Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity |
title_full | Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity |
title_fullStr | Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity |
title_full_unstemmed | Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity |
title_short | Broad-host-range lytic Erwinia phage Key with exopolysaccharide degrading activity |
title_sort | broad-host-range lytic erwinia phage key with exopolysaccharide degrading activity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10194208/ https://www.ncbi.nlm.nih.gov/pubmed/36907559 http://dx.doi.org/10.1016/j.virusres.2023.199088 |
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