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How, not if, is the question mycologists should be asking about DNA-based typification

Fungal metabarcoding of substrates such as soil, wood, and water is uncovering an unprecedented number of fungal species that do not seem to produce tangible morphological structures and that defy our best attempts at cultivation, thus falling outside the scope of the International Code of Nomenclat...

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Autores principales: Nilsson, R. Henrik, Ryberg, Martin, Wurzbacher, Christian, Tedersoo, Leho, Anslan, Sten, Põlme, Sergei, Spirin, Viacheslav, Mikryukov, Vladimir, Svantesson, Sten, Hartmann, Martin, Lennartsdotter, Charlotte, Belford, Pauline, Khomich, Maryia, Retter, Alice, Corcoll, Natàlia, Gómez Martinez, Daniela, Jansson, Tobias, Ghobad-Nejhad, Masoomeh, Vu, Duong, Sanchez-Garcia, Marisol, Kristiansson, Erik, Abarenkov, Kessy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10194844/
https://www.ncbi.nlm.nih.gov/pubmed/37214179
http://dx.doi.org/10.3897/mycokeys.96.102669
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author Nilsson, R. Henrik
Ryberg, Martin
Wurzbacher, Christian
Tedersoo, Leho
Anslan, Sten
Põlme, Sergei
Spirin, Viacheslav
Mikryukov, Vladimir
Svantesson, Sten
Hartmann, Martin
Lennartsdotter, Charlotte
Belford, Pauline
Khomich, Maryia
Retter, Alice
Corcoll, Natàlia
Gómez Martinez, Daniela
Jansson, Tobias
Ghobad-Nejhad, Masoomeh
Vu, Duong
Sanchez-Garcia, Marisol
Kristiansson, Erik
Abarenkov, Kessy
author_facet Nilsson, R. Henrik
Ryberg, Martin
Wurzbacher, Christian
Tedersoo, Leho
Anslan, Sten
Põlme, Sergei
Spirin, Viacheslav
Mikryukov, Vladimir
Svantesson, Sten
Hartmann, Martin
Lennartsdotter, Charlotte
Belford, Pauline
Khomich, Maryia
Retter, Alice
Corcoll, Natàlia
Gómez Martinez, Daniela
Jansson, Tobias
Ghobad-Nejhad, Masoomeh
Vu, Duong
Sanchez-Garcia, Marisol
Kristiansson, Erik
Abarenkov, Kessy
author_sort Nilsson, R. Henrik
collection PubMed
description Fungal metabarcoding of substrates such as soil, wood, and water is uncovering an unprecedented number of fungal species that do not seem to produce tangible morphological structures and that defy our best attempts at cultivation, thus falling outside the scope of the International Code of Nomenclature for algae, fungi, and plants. The present study uses the new, ninth release of the species hypotheses of the UNITE database to show that species discovery through environmental sequencing vastly outpaces traditional, Sanger sequencing-based efforts in a strongly increasing trend over the last five years. Our findings challenge the present stance of some in the mycological community – that the current situation is satisfactory and that no change is needed to “the code” – and suggest that we should be discussing not whether to allow DNA-based descriptions (typifications) of species and by extension higher ranks of fungi, but what the precise requirements for such DNA-based typifications should be. We submit a tentative list of such criteria for further discussion. The present authors hope for a revitalized and deepened discussion on DNA-based typification, because to us it seems harmful and counter-productive to intentionally deny the overwhelming majority of extant fungi a formal standing under the International Code of Nomenclature for algae, fungi, and plants.
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spelling pubmed-101948442023-05-19 How, not if, is the question mycologists should be asking about DNA-based typification Nilsson, R. Henrik Ryberg, Martin Wurzbacher, Christian Tedersoo, Leho Anslan, Sten Põlme, Sergei Spirin, Viacheslav Mikryukov, Vladimir Svantesson, Sten Hartmann, Martin Lennartsdotter, Charlotte Belford, Pauline Khomich, Maryia Retter, Alice Corcoll, Natàlia Gómez Martinez, Daniela Jansson, Tobias Ghobad-Nejhad, Masoomeh Vu, Duong Sanchez-Garcia, Marisol Kristiansson, Erik Abarenkov, Kessy MycoKeys Forum Paper Fungal metabarcoding of substrates such as soil, wood, and water is uncovering an unprecedented number of fungal species that do not seem to produce tangible morphological structures and that defy our best attempts at cultivation, thus falling outside the scope of the International Code of Nomenclature for algae, fungi, and plants. The present study uses the new, ninth release of the species hypotheses of the UNITE database to show that species discovery through environmental sequencing vastly outpaces traditional, Sanger sequencing-based efforts in a strongly increasing trend over the last five years. Our findings challenge the present stance of some in the mycological community – that the current situation is satisfactory and that no change is needed to “the code” – and suggest that we should be discussing not whether to allow DNA-based descriptions (typifications) of species and by extension higher ranks of fungi, but what the precise requirements for such DNA-based typifications should be. We submit a tentative list of such criteria for further discussion. The present authors hope for a revitalized and deepened discussion on DNA-based typification, because to us it seems harmful and counter-productive to intentionally deny the overwhelming majority of extant fungi a formal standing under the International Code of Nomenclature for algae, fungi, and plants. Pensoft Publishers 2023-04-10 /pmc/articles/PMC10194844/ /pubmed/37214179 http://dx.doi.org/10.3897/mycokeys.96.102669 Text en R. Henrik Nilsson, Martin Ryberg, Christian Wurzbacher, Leho Tedersoo, Sten Anslan, Sergei Põlme, Viacheslav Spirin, Vladimir Mikryukov, Sten Svantesson, Martin Hartmann, Charlotte Lennartsdotter, Pauline Belford, Maryia Khomich, Alice Retter, Natàlia Corcoll, Daniela Gómez Martinez, Tobias Jansson, Masoomeh Ghobad-Nejhad, Duong Vu, Marisol Sanchez-Garcia, Erik Kristiansson, Kessy Abarenkov https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Forum Paper
Nilsson, R. Henrik
Ryberg, Martin
Wurzbacher, Christian
Tedersoo, Leho
Anslan, Sten
Põlme, Sergei
Spirin, Viacheslav
Mikryukov, Vladimir
Svantesson, Sten
Hartmann, Martin
Lennartsdotter, Charlotte
Belford, Pauline
Khomich, Maryia
Retter, Alice
Corcoll, Natàlia
Gómez Martinez, Daniela
Jansson, Tobias
Ghobad-Nejhad, Masoomeh
Vu, Duong
Sanchez-Garcia, Marisol
Kristiansson, Erik
Abarenkov, Kessy
How, not if, is the question mycologists should be asking about DNA-based typification
title How, not if, is the question mycologists should be asking about DNA-based typification
title_full How, not if, is the question mycologists should be asking about DNA-based typification
title_fullStr How, not if, is the question mycologists should be asking about DNA-based typification
title_full_unstemmed How, not if, is the question mycologists should be asking about DNA-based typification
title_short How, not if, is the question mycologists should be asking about DNA-based typification
title_sort how, not if, is the question mycologists should be asking about dna-based typification
topic Forum Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10194844/
https://www.ncbi.nlm.nih.gov/pubmed/37214179
http://dx.doi.org/10.3897/mycokeys.96.102669
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