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Electronic surveillance of patient safety events using natural language processing
OBJECTIVE: We describe our approach to surveillance of reportable safety events captured in hospital data including free-text clinical notes. We hypothesize that a) some patient safety events are documented only in the clinical notes and not in any other accessible source; and b) large-scale abstrac...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10195078/ https://www.ncbi.nlm.nih.gov/pubmed/36330784 http://dx.doi.org/10.1177/14604582221132429 |
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author | Ozonoff, Al Milliren, Carly E Fournier, Kerri Welcher, Jennifer Landschaft, Assaf Samnaliev, Mihail Saluvan, Mehmet Waltzman, Mark Kimia, Amir A |
author_facet | Ozonoff, Al Milliren, Carly E Fournier, Kerri Welcher, Jennifer Landschaft, Assaf Samnaliev, Mihail Saluvan, Mehmet Waltzman, Mark Kimia, Amir A |
author_sort | Ozonoff, Al |
collection | PubMed |
description | OBJECTIVE: We describe our approach to surveillance of reportable safety events captured in hospital data including free-text clinical notes. We hypothesize that a) some patient safety events are documented only in the clinical notes and not in any other accessible source; and b) large-scale abstraction of event data from clinical notes is feasible. MATERIALS AND METHODS: We use regular expressions to generate a training data set for a machine learning model and apply this model to the full set of clinical notes and conduct further review to identify safety events of interest. We demonstrate this approach on peripheral intravenous (PIV) infiltrations and extravasations (PIVIEs). RESULTS: During Phase 1, we collected 21,362 clinical notes, of which 2342 were reviewed. We identified 125 PIV events, of which 44 cases (35%) were not captured by other patient safety systems. During Phase 2, we collected 60,735 clinical notes and identified 440 infiltrate events. Our classifier demonstrated accuracy above 90%. CONCLUSION: Our method to identify safety events from the free text of clinical documentation offers a feasible and scalable approach to enhance existing patient safety systems. Expert reviewers, using a machine learning model, can conduct routine surveillance of patient safety events. |
format | Online Article Text |
id | pubmed-10195078 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
record_format | MEDLINE/PubMed |
spelling | pubmed-101950782023-05-18 Electronic surveillance of patient safety events using natural language processing Ozonoff, Al Milliren, Carly E Fournier, Kerri Welcher, Jennifer Landschaft, Assaf Samnaliev, Mihail Saluvan, Mehmet Waltzman, Mark Kimia, Amir A Health Informatics J Article OBJECTIVE: We describe our approach to surveillance of reportable safety events captured in hospital data including free-text clinical notes. We hypothesize that a) some patient safety events are documented only in the clinical notes and not in any other accessible source; and b) large-scale abstraction of event data from clinical notes is feasible. MATERIALS AND METHODS: We use regular expressions to generate a training data set for a machine learning model and apply this model to the full set of clinical notes and conduct further review to identify safety events of interest. We demonstrate this approach on peripheral intravenous (PIV) infiltrations and extravasations (PIVIEs). RESULTS: During Phase 1, we collected 21,362 clinical notes, of which 2342 were reviewed. We identified 125 PIV events, of which 44 cases (35%) were not captured by other patient safety systems. During Phase 2, we collected 60,735 clinical notes and identified 440 infiltrate events. Our classifier demonstrated accuracy above 90%. CONCLUSION: Our method to identify safety events from the free text of clinical documentation offers a feasible and scalable approach to enhance existing patient safety systems. Expert reviewers, using a machine learning model, can conduct routine surveillance of patient safety events. 2022 /pmc/articles/PMC10195078/ /pubmed/36330784 http://dx.doi.org/10.1177/14604582221132429 Text en https://creativecommons.org/licenses/by-nc/4.0/Creative Commons Non Commercial CC BY-NC: This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). Article reuse guidelines: sagepub.com/journals-permissions (https://uk.sagepub.com/en-gb/eur/journals-permissions) |
spellingShingle | Article Ozonoff, Al Milliren, Carly E Fournier, Kerri Welcher, Jennifer Landschaft, Assaf Samnaliev, Mihail Saluvan, Mehmet Waltzman, Mark Kimia, Amir A Electronic surveillance of patient safety events using natural language processing |
title | Electronic surveillance of patient safety events using natural language processing |
title_full | Electronic surveillance of patient safety events using natural language processing |
title_fullStr | Electronic surveillance of patient safety events using natural language processing |
title_full_unstemmed | Electronic surveillance of patient safety events using natural language processing |
title_short | Electronic surveillance of patient safety events using natural language processing |
title_sort | electronic surveillance of patient safety events using natural language processing |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10195078/ https://www.ncbi.nlm.nih.gov/pubmed/36330784 http://dx.doi.org/10.1177/14604582221132429 |
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