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Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy

The assembly of biomolecular condensates is driven by liquid–liquid phase separation. To understand the structure and functions of these condensates, it is essential to characterize the underlying driving forces, e.g., protein–protein and protein–RNA interactions. As both structured and low-complexi...

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Autores principales: Zhang, Hanyu, Fan, Weiwei, Nshogoza, Gilbert, Liu, Yaqian, Gao, Jia, Wu, Jihui, Shi, Yunyu, Tu, Xiaoming, Zhang, Jiahai, Ruan, Ke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biophysics Reports Editorial Office 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10195809/
https://www.ncbi.nlm.nih.gov/pubmed/37287829
http://dx.doi.org/10.52601/bpr.2022.210034
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author Zhang, Hanyu
Fan, Weiwei
Nshogoza, Gilbert
Liu, Yaqian
Gao, Jia
Wu, Jihui
Shi, Yunyu
Tu, Xiaoming
Zhang, Jiahai
Ruan, Ke
author_facet Zhang, Hanyu
Fan, Weiwei
Nshogoza, Gilbert
Liu, Yaqian
Gao, Jia
Wu, Jihui
Shi, Yunyu
Tu, Xiaoming
Zhang, Jiahai
Ruan, Ke
author_sort Zhang, Hanyu
collection PubMed
description The assembly of biomolecular condensates is driven by liquid–liquid phase separation. To understand the structure and functions of these condensates, it is essential to characterize the underlying driving forces, e.g., protein–protein and protein–RNA interactions. As both structured and low-complexity domains are involved in the phase separation process, NMR is probably the only technique that can be used to depict the binding topology and interaction modes for the structured and nonstructured domains simultaneously. Atomic-resolution analysis for the intramolecular and intermolecular interactions between any pair of components sheds light on the mechanism for phase separation and biomolecular condensate assembly and disassembly. Herein, we describe the procedures used for the most extensively employed NMR techniques to characterize key interactions for biomolecular phase separation.
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spelling pubmed-101958092023-06-07 Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy Zhang, Hanyu Fan, Weiwei Nshogoza, Gilbert Liu, Yaqian Gao, Jia Wu, Jihui Shi, Yunyu Tu, Xiaoming Zhang, Jiahai Ruan, Ke Biophys Rep Protocol The assembly of biomolecular condensates is driven by liquid–liquid phase separation. To understand the structure and functions of these condensates, it is essential to characterize the underlying driving forces, e.g., protein–protein and protein–RNA interactions. As both structured and low-complexity domains are involved in the phase separation process, NMR is probably the only technique that can be used to depict the binding topology and interaction modes for the structured and nonstructured domains simultaneously. Atomic-resolution analysis for the intramolecular and intermolecular interactions between any pair of components sheds light on the mechanism for phase separation and biomolecular condensate assembly and disassembly. Herein, we describe the procedures used for the most extensively employed NMR techniques to characterize key interactions for biomolecular phase separation. Biophysics Reports Editorial Office 2022-04-30 /pmc/articles/PMC10195809/ /pubmed/37287829 http://dx.doi.org/10.52601/bpr.2022.210034 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Protocol
Zhang, Hanyu
Fan, Weiwei
Nshogoza, Gilbert
Liu, Yaqian
Gao, Jia
Wu, Jihui
Shi, Yunyu
Tu, Xiaoming
Zhang, Jiahai
Ruan, Ke
Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy
title Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy
title_full Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy
title_fullStr Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy
title_full_unstemmed Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy
title_short Driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy
title_sort driving force of biomolecular liquid–liquid phase separation probed by nuclear magnetic resonance spectroscopy
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10195809/
https://www.ncbi.nlm.nih.gov/pubmed/37287829
http://dx.doi.org/10.52601/bpr.2022.210034
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