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Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies

OBJECTIVES: This study aimed to explore and develop artificial intelligence approaches for efficient classification of pulmonary nodules based on CT scans. MATERIALS AND METHODS: A number of 1007 nodules were obtained from 551 patients of LIDC-IDRI dataset. All nodules were cropped into 64 × 64 PNG...

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Autores principales: Saied, Mohamed, Raafat, Mourad, Yehia, Sherif, Khalil, Magdy M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10195968/
https://www.ncbi.nlm.nih.gov/pubmed/37199791
http://dx.doi.org/10.1186/s13244-023-01441-6
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author Saied, Mohamed
Raafat, Mourad
Yehia, Sherif
Khalil, Magdy M.
author_facet Saied, Mohamed
Raafat, Mourad
Yehia, Sherif
Khalil, Magdy M.
author_sort Saied, Mohamed
collection PubMed
description OBJECTIVES: This study aimed to explore and develop artificial intelligence approaches for efficient classification of pulmonary nodules based on CT scans. MATERIALS AND METHODS: A number of 1007 nodules were obtained from 551 patients of LIDC-IDRI dataset. All nodules were cropped into 64 × 64 PNG images , and preprocessing was carried out to clean the image from surrounding non-nodular structure. In machine learning method, texture Haralick and local binary pattern features were extracted. Four features were selected using principal component analysis (PCA) algorithm before running classifiers. In deep learning, a simple CNN model was constructed and transfer learning was applied using VGG-16 and VGG-19, DenseNet-121 and DenseNet-169 and ResNet as pre-trained models with fine tuning. RESULTS: In statistical machine learning method, the optimal AUROC was 0.885 ± 0.024 with random forest classifier and the best accuracy was 0.819 ± 0.016 with support vector machine. In deep learning, the best accuracy reached 90.39% with DenseNet-121 model and the best AUROC was 96.0%, 95.39% and 95.69% with simple CNN, VGG-16 and VGG-19, respectively. The best sensitivity reached 90.32% using DenseNet-169 and the best specificity attained was 93.65% when applying the DenseNet-121 and ResNet-152V2. CONCLUSION: Deep learning methods with transfer learning showed several benefits over statistical learning in terms of nodule prediction performance and saving efforts and time in training large datasets. SVM and DenseNet-121 showed the best performance when compared with their counterparts. There is still more room for improvement, especially when more data can be trained and lesion volume is represented in 3D. CLINICAL RELEVANCE STATEMENT: Machine learning methods offer unique opportunities and open new venues in clinical diagnosis of lung cancer. The deep learning approach has been more accurate than statistical learning methods. SVM and DenseNet-121 showed superior performance in pulmonary nodule classification. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-023-01441-6.
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spelling pubmed-101959682023-05-20 Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies Saied, Mohamed Raafat, Mourad Yehia, Sherif Khalil, Magdy M. Insights Imaging Original Article OBJECTIVES: This study aimed to explore and develop artificial intelligence approaches for efficient classification of pulmonary nodules based on CT scans. MATERIALS AND METHODS: A number of 1007 nodules were obtained from 551 patients of LIDC-IDRI dataset. All nodules were cropped into 64 × 64 PNG images , and preprocessing was carried out to clean the image from surrounding non-nodular structure. In machine learning method, texture Haralick and local binary pattern features were extracted. Four features were selected using principal component analysis (PCA) algorithm before running classifiers. In deep learning, a simple CNN model was constructed and transfer learning was applied using VGG-16 and VGG-19, DenseNet-121 and DenseNet-169 and ResNet as pre-trained models with fine tuning. RESULTS: In statistical machine learning method, the optimal AUROC was 0.885 ± 0.024 with random forest classifier and the best accuracy was 0.819 ± 0.016 with support vector machine. In deep learning, the best accuracy reached 90.39% with DenseNet-121 model and the best AUROC was 96.0%, 95.39% and 95.69% with simple CNN, VGG-16 and VGG-19, respectively. The best sensitivity reached 90.32% using DenseNet-169 and the best specificity attained was 93.65% when applying the DenseNet-121 and ResNet-152V2. CONCLUSION: Deep learning methods with transfer learning showed several benefits over statistical learning in terms of nodule prediction performance and saving efforts and time in training large datasets. SVM and DenseNet-121 showed the best performance when compared with their counterparts. There is still more room for improvement, especially when more data can be trained and lesion volume is represented in 3D. CLINICAL RELEVANCE STATEMENT: Machine learning methods offer unique opportunities and open new venues in clinical diagnosis of lung cancer. The deep learning approach has been more accurate than statistical learning methods. SVM and DenseNet-121 showed superior performance in pulmonary nodule classification. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-023-01441-6. Springer Vienna 2023-05-18 /pmc/articles/PMC10195968/ /pubmed/37199791 http://dx.doi.org/10.1186/s13244-023-01441-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Saied, Mohamed
Raafat, Mourad
Yehia, Sherif
Khalil, Magdy M.
Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies
title Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies
title_full Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies
title_fullStr Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies
title_full_unstemmed Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies
title_short Efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies
title_sort efficient pulmonary nodules classification using radiomics and different artificial intelligence strategies
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10195968/
https://www.ncbi.nlm.nih.gov/pubmed/37199791
http://dx.doi.org/10.1186/s13244-023-01441-6
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