Cargando…
Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies
BACKGROUND: For blood-stage malaria vaccine development, the in vitro growth inhibition assay (GIA) has been widely used to evaluate functionality of vaccine-induced antibodies (Ab), and Plasmodium falciparum reticulocyte-binding protein homolog 5 (RH5) is a leading blood-stage antigen. However, pre...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10196285/ https://www.ncbi.nlm.nih.gov/pubmed/37208733 http://dx.doi.org/10.1186/s12936-023-04591-6 |
_version_ | 1785044314826473472 |
---|---|
author | Miura, Kazutoyo Diouf, Ababacar Fay, Michael P. Barrett, Jordan R. Payne, Ruth O. Olotu, Ally I. Minassian, Angela M. Silk, Sarah E. Draper, Simon J. Long, Carole A. |
author_facet | Miura, Kazutoyo Diouf, Ababacar Fay, Michael P. Barrett, Jordan R. Payne, Ruth O. Olotu, Ally I. Minassian, Angela M. Silk, Sarah E. Draper, Simon J. Long, Carole A. |
author_sort | Miura, Kazutoyo |
collection | PubMed |
description | BACKGROUND: For blood-stage malaria vaccine development, the in vitro growth inhibition assay (GIA) has been widely used to evaluate functionality of vaccine-induced antibodies (Ab), and Plasmodium falciparum reticulocyte-binding protein homolog 5 (RH5) is a leading blood-stage antigen. However, precision, also called “error of assay (EoA)”, in GIA readouts and the source of EoA has not been evaluated systematically. METHODS: In the Main GIA experiment, 4 different cultures of P. falciparum 3D7 parasites were prepared with red blood cells (RBC) collected from 4 different donors. For each culture, 7 different anti-RH5 Ab (either monoclonal or polyclonal Ab) were tested by GIA at two concentrations on three different days (168 data points). To evaluate sources of EoA in % inhibition in GIA (%GIA), a linear model fit was conducted including donor (source of RBC) and day of GIA as independent variables. In addition, 180 human anti-RH5 polyclonal Ab were tested in a Clinical GIA experiment, where each Ab was tested at multiple concentrations in at least 3 independent GIAs using different RBCs (5,093 data points). The standard deviation (sd) in %GIA and in GIA(50) (Ab concentration that gave 50%GIA) readouts, and impact of repeat assays on 95% confidence interval (95%CI) of these readouts was estimated. RESULTS: The Main GIA experiment revealed that the RBC donor effect was much larger than the day effect, and an obvious donor effect was also observed in the Clinical GIA experiment. Both %GIA and log-transformed GIA(50) data reasonably fit a constant sd model, and sd of %GIA and log-transformed GIA(50) measurements were calculated as 7.54 and 0.206, respectively. Taking the average of three repeat assays (using three different RBCs) reduces the 95%CI width in %GIA or in GIA(50) measurements by ~ half compared to a single assay. CONCLUSIONS: The RBC donor effect (donor-to-donor variance on the same day) in GIA was much bigger than the day effect (day-to-day variance using the same donor’s RBC) at least for the RH5 Ab evaluated in this study; thus, future GIA studies should consider the donor effect. In addition, the 95%CI for %GIA and GIA(50) shown here help when comparing GIA results from different samples/groups/studies; therefore, this study supports future malaria blood-stage vaccine development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12936-023-04591-6. |
format | Online Article Text |
id | pubmed-10196285 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-101962852023-05-20 Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies Miura, Kazutoyo Diouf, Ababacar Fay, Michael P. Barrett, Jordan R. Payne, Ruth O. Olotu, Ally I. Minassian, Angela M. Silk, Sarah E. Draper, Simon J. Long, Carole A. Malar J Research BACKGROUND: For blood-stage malaria vaccine development, the in vitro growth inhibition assay (GIA) has been widely used to evaluate functionality of vaccine-induced antibodies (Ab), and Plasmodium falciparum reticulocyte-binding protein homolog 5 (RH5) is a leading blood-stage antigen. However, precision, also called “error of assay (EoA)”, in GIA readouts and the source of EoA has not been evaluated systematically. METHODS: In the Main GIA experiment, 4 different cultures of P. falciparum 3D7 parasites were prepared with red blood cells (RBC) collected from 4 different donors. For each culture, 7 different anti-RH5 Ab (either monoclonal or polyclonal Ab) were tested by GIA at two concentrations on three different days (168 data points). To evaluate sources of EoA in % inhibition in GIA (%GIA), a linear model fit was conducted including donor (source of RBC) and day of GIA as independent variables. In addition, 180 human anti-RH5 polyclonal Ab were tested in a Clinical GIA experiment, where each Ab was tested at multiple concentrations in at least 3 independent GIAs using different RBCs (5,093 data points). The standard deviation (sd) in %GIA and in GIA(50) (Ab concentration that gave 50%GIA) readouts, and impact of repeat assays on 95% confidence interval (95%CI) of these readouts was estimated. RESULTS: The Main GIA experiment revealed that the RBC donor effect was much larger than the day effect, and an obvious donor effect was also observed in the Clinical GIA experiment. Both %GIA and log-transformed GIA(50) data reasonably fit a constant sd model, and sd of %GIA and log-transformed GIA(50) measurements were calculated as 7.54 and 0.206, respectively. Taking the average of three repeat assays (using three different RBCs) reduces the 95%CI width in %GIA or in GIA(50) measurements by ~ half compared to a single assay. CONCLUSIONS: The RBC donor effect (donor-to-donor variance on the same day) in GIA was much bigger than the day effect (day-to-day variance using the same donor’s RBC) at least for the RH5 Ab evaluated in this study; thus, future GIA studies should consider the donor effect. In addition, the 95%CI for %GIA and GIA(50) shown here help when comparing GIA results from different samples/groups/studies; therefore, this study supports future malaria blood-stage vaccine development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12936-023-04591-6. BioMed Central 2023-05-19 /pmc/articles/PMC10196285/ /pubmed/37208733 http://dx.doi.org/10.1186/s12936-023-04591-6 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Miura, Kazutoyo Diouf, Ababacar Fay, Michael P. Barrett, Jordan R. Payne, Ruth O. Olotu, Ally I. Minassian, Angela M. Silk, Sarah E. Draper, Simon J. Long, Carole A. Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies |
title | Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies |
title_full | Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies |
title_fullStr | Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies |
title_full_unstemmed | Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies |
title_short | Assessment of precision in growth inhibition assay (GIA) using human anti-PfRH5 antibodies |
title_sort | assessment of precision in growth inhibition assay (gia) using human anti-pfrh5 antibodies |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10196285/ https://www.ncbi.nlm.nih.gov/pubmed/37208733 http://dx.doi.org/10.1186/s12936-023-04591-6 |
work_keys_str_mv | AT miurakazutoyo assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT dioufababacar assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT faymichaelp assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT barrettjordanr assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT paynerutho assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT olotuallyi assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT minassianangelam assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT silksarahe assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT drapersimonj assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies AT longcarolea assessmentofprecisioningrowthinhibitionassaygiausinghumanantipfrh5antibodies |