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aaHash: recursive amino acid sequence hashing
MOTIVATION: K-mer hashing is a common operation in many foundational bioinformatics problems. However, generic string hashing algorithms are not optimized for this application. Strings in bioinformatics use specific alphabets, a trait leveraged for nucleic acid sequences in earlier work. We note tha...
Autores principales: | Wong, Johnathan, Kazemi, Parham, Coombe, Lauren, Warren, René L., Birol, Inanç |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10197579/ https://www.ncbi.nlm.nih.gov/pubmed/37214907 http://dx.doi.org/10.1101/2023.05.08.539909 |
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