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Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia

PURPOSE: This study was conducted to investigate potential candidate pathogenic genes in early-onset high myopia (eoHM) in families with eoHM. METHODS: Whole-exome sequencing was performed on probands with eoHM to identify potential pathogenic genes. Sanger sequencing was used to verify the identifi...

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Autores principales: Yang, Entuan, Yu, Jifeng, Liu, Xue, Chu, Huihui, Li, Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Association for Research in Vision and Ophthalmology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10198284/
https://www.ncbi.nlm.nih.gov/pubmed/37191617
http://dx.doi.org/10.1167/iovs.64.5.10
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author Yang, Entuan
Yu, Jifeng
Liu, Xue
Chu, Huihui
Li, Li
author_facet Yang, Entuan
Yu, Jifeng
Liu, Xue
Chu, Huihui
Li, Li
author_sort Yang, Entuan
collection PubMed
description PURPOSE: This study was conducted to investigate potential candidate pathogenic genes in early-onset high myopia (eoHM) in families with eoHM. METHODS: Whole-exome sequencing was performed on probands with eoHM to identify potential pathogenic genes. Sanger sequencing was used to verify the identified gene mutations causing eoHM in first-degree relatives of the proband. The identified mutations were screened out by bioinformatics analysis combined with segregation analysis. RESULTS: A total of 131 variant loci, involving 97 genes, were detected in the 30 families. A total of 28 genes (37 variants), which were carried by 24 families, were verified and analyzed by Sanger sequencing. We identified five genes and 10 loci associated with eoHM, which have not been reported in previous research. Hemizygous mutations in COL4A5, NYX, and CACNA1F were detected in this study. Inherited retinal disease-associated genes were found in 76.67% (23/30) of families. Genes that can be expressed in the retina in the Online Mendelian Inheritance in Man database were found in 33.33% (10/30) of families. Mutations in the genes associated with eoHM, including CCDC111, SLC39A5, P4HA2, CPSF1, P4HA2, and GRM6, were detected. The mutual correlation between candidate genes and phenotype of fundus photography was revealed in our study. The eoHM candidate gene mutation types contain five categories: missense mutations (78.38%), nonsense (8.11%), frameshift mutation (5.41%), classical splice site mutation (5.41%), and initiation codon mutation (2.70%). CONCLUSIONS: Candidate genes carried by patients with eoHM are closely related to inherited retinal diseases. Genetic screening in children with eoHM facilitates the early identification and intervention of syndromic hereditary ocular disorders and certain hereditary ophthalmopathies.
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spelling pubmed-101982842023-05-20 Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia Yang, Entuan Yu, Jifeng Liu, Xue Chu, Huihui Li, Li Invest Ophthalmol Vis Sci Genetics PURPOSE: This study was conducted to investigate potential candidate pathogenic genes in early-onset high myopia (eoHM) in families with eoHM. METHODS: Whole-exome sequencing was performed on probands with eoHM to identify potential pathogenic genes. Sanger sequencing was used to verify the identified gene mutations causing eoHM in first-degree relatives of the proband. The identified mutations were screened out by bioinformatics analysis combined with segregation analysis. RESULTS: A total of 131 variant loci, involving 97 genes, were detected in the 30 families. A total of 28 genes (37 variants), which were carried by 24 families, were verified and analyzed by Sanger sequencing. We identified five genes and 10 loci associated with eoHM, which have not been reported in previous research. Hemizygous mutations in COL4A5, NYX, and CACNA1F were detected in this study. Inherited retinal disease-associated genes were found in 76.67% (23/30) of families. Genes that can be expressed in the retina in the Online Mendelian Inheritance in Man database were found in 33.33% (10/30) of families. Mutations in the genes associated with eoHM, including CCDC111, SLC39A5, P4HA2, CPSF1, P4HA2, and GRM6, were detected. The mutual correlation between candidate genes and phenotype of fundus photography was revealed in our study. The eoHM candidate gene mutation types contain five categories: missense mutations (78.38%), nonsense (8.11%), frameshift mutation (5.41%), classical splice site mutation (5.41%), and initiation codon mutation (2.70%). CONCLUSIONS: Candidate genes carried by patients with eoHM are closely related to inherited retinal diseases. Genetic screening in children with eoHM facilitates the early identification and intervention of syndromic hereditary ocular disorders and certain hereditary ophthalmopathies. The Association for Research in Vision and Ophthalmology 2023-05-16 /pmc/articles/PMC10198284/ /pubmed/37191617 http://dx.doi.org/10.1167/iovs.64.5.10 Text en Copyright 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
spellingShingle Genetics
Yang, Entuan
Yu, Jifeng
Liu, Xue
Chu, Huihui
Li, Li
Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia
title Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia
title_full Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia
title_fullStr Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia
title_full_unstemmed Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia
title_short Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia
title_sort familial whole exome sequencing study of 30 families with early-onset high myopia
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10198284/
https://www.ncbi.nlm.nih.gov/pubmed/37191617
http://dx.doi.org/10.1167/iovs.64.5.10
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