Cargando…

Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source

High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competit...

Descripción completa

Detalles Bibliográficos
Autores principales: Gul, Mehmet, Ayan, Esra, Destan, Ebru, Johnson, J. Austin, Shafiei, Alaleh, Kepceoğlu, Abdullah, Yilmaz, Merve, Ertem, Fatma Betül, Yapici, İlkin, Tosun, Bilge, Baldir, Nilüfer, Tokay, Nurettin, Nergiz, Zeliş, Karakadioğlu, Gözde, Paydos, Seyide Seda, Kulakman, Cahine, Ferah, Cengiz Kaan, Güven, Ömür, Atalay, Necati, Akcan, Enver Kamil, Cetinok, Haluk, Arslan, Nazlı Eylül, Şabanoğlu, Kardelen, Aşci, Bengisu, Tavli, Serra, Gümüsboğa, Helin, Altuntaş, Sevde, Otsuka, Masami, Fujita, Mikako, Teki̇n, Şaban, Çi̇ftçi̇, Halilibrahim, Durdaği, Serdar, Karaca, Ezgi, Kaplan Türköz, Burcu, Kabasakal, Burak Veli, Kati, Ahmet, DeMi̇rci̇, Hasan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10198979/
https://www.ncbi.nlm.nih.gov/pubmed/37208392
http://dx.doi.org/10.1038/s41598-023-33989-0
_version_ 1785044833629372416
author Gul, Mehmet
Ayan, Esra
Destan, Ebru
Johnson, J. Austin
Shafiei, Alaleh
Kepceoğlu, Abdullah
Yilmaz, Merve
Ertem, Fatma Betül
Yapici, İlkin
Tosun, Bilge
Baldir, Nilüfer
Tokay, Nurettin
Nergiz, Zeliş
Karakadioğlu, Gözde
Paydos, Seyide Seda
Kulakman, Cahine
Ferah, Cengiz Kaan
Güven, Ömür
Atalay, Necati
Akcan, Enver Kamil
Cetinok, Haluk
Arslan, Nazlı Eylül
Şabanoğlu, Kardelen
Aşci, Bengisu
Tavli, Serra
Gümüsboğa, Helin
Altuntaş, Sevde
Otsuka, Masami
Fujita, Mikako
Teki̇n, Şaban
Çi̇ftçi̇, Halilibrahim
Durdaği, Serdar
Karaca, Ezgi
Kaplan Türköz, Burcu
Kabasakal, Burak Veli
Kati, Ahmet
DeMi̇rci̇, Hasan
author_facet Gul, Mehmet
Ayan, Esra
Destan, Ebru
Johnson, J. Austin
Shafiei, Alaleh
Kepceoğlu, Abdullah
Yilmaz, Merve
Ertem, Fatma Betül
Yapici, İlkin
Tosun, Bilge
Baldir, Nilüfer
Tokay, Nurettin
Nergiz, Zeliş
Karakadioğlu, Gözde
Paydos, Seyide Seda
Kulakman, Cahine
Ferah, Cengiz Kaan
Güven, Ömür
Atalay, Necati
Akcan, Enver Kamil
Cetinok, Haluk
Arslan, Nazlı Eylül
Şabanoğlu, Kardelen
Aşci, Bengisu
Tavli, Serra
Gümüsboğa, Helin
Altuntaş, Sevde
Otsuka, Masami
Fujita, Mikako
Teki̇n, Şaban
Çi̇ftçi̇, Halilibrahim
Durdaği, Serdar
Karaca, Ezgi
Kaplan Türköz, Burcu
Kabasakal, Burak Veli
Kati, Ahmet
DeMi̇rci̇, Hasan
author_sort Gul, Mehmet
collection PubMed
description High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competitive X-ray beamtime. Obtaining a high volume of well-diffracting, sufficient-size crystals while mitigating radiation damage remains a critical bottleneck of serial crystallography. As an alternative, we introduce the plate-reader module adapted for using a 72-well Terasaki plate for biomacromolecule structure determination at a convenience of a home X-ray source. We also present the first ambient temperature lysozyme structure determined at the Turkish light source (Turkish DeLight). The complete dataset was collected in 18.5 min with resolution extending to 2.39 Å and 100% completeness. Combined with our previous cryogenic structure (PDB ID: 7Y6A), the ambient temperature structure provides invaluable information about the structural dynamics of the lysozyme. Turkish DeLight provides robust and rapid ambient temperature biomacromolecular structure determination with limited radiation damage.
format Online
Article
Text
id pubmed-10198979
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-101989792023-05-21 Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source Gul, Mehmet Ayan, Esra Destan, Ebru Johnson, J. Austin Shafiei, Alaleh Kepceoğlu, Abdullah Yilmaz, Merve Ertem, Fatma Betül Yapici, İlkin Tosun, Bilge Baldir, Nilüfer Tokay, Nurettin Nergiz, Zeliş Karakadioğlu, Gözde Paydos, Seyide Seda Kulakman, Cahine Ferah, Cengiz Kaan Güven, Ömür Atalay, Necati Akcan, Enver Kamil Cetinok, Haluk Arslan, Nazlı Eylül Şabanoğlu, Kardelen Aşci, Bengisu Tavli, Serra Gümüsboğa, Helin Altuntaş, Sevde Otsuka, Masami Fujita, Mikako Teki̇n, Şaban Çi̇ftçi̇, Halilibrahim Durdaği, Serdar Karaca, Ezgi Kaplan Türköz, Burcu Kabasakal, Burak Veli Kati, Ahmet DeMi̇rci̇, Hasan Sci Rep Article High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competitive X-ray beamtime. Obtaining a high volume of well-diffracting, sufficient-size crystals while mitigating radiation damage remains a critical bottleneck of serial crystallography. As an alternative, we introduce the plate-reader module adapted for using a 72-well Terasaki plate for biomacromolecule structure determination at a convenience of a home X-ray source. We also present the first ambient temperature lysozyme structure determined at the Turkish light source (Turkish DeLight). The complete dataset was collected in 18.5 min with resolution extending to 2.39 Å and 100% completeness. Combined with our previous cryogenic structure (PDB ID: 7Y6A), the ambient temperature structure provides invaluable information about the structural dynamics of the lysozyme. Turkish DeLight provides robust and rapid ambient temperature biomacromolecular structure determination with limited radiation damage. Nature Publishing Group UK 2023-05-19 /pmc/articles/PMC10198979/ /pubmed/37208392 http://dx.doi.org/10.1038/s41598-023-33989-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Gul, Mehmet
Ayan, Esra
Destan, Ebru
Johnson, J. Austin
Shafiei, Alaleh
Kepceoğlu, Abdullah
Yilmaz, Merve
Ertem, Fatma Betül
Yapici, İlkin
Tosun, Bilge
Baldir, Nilüfer
Tokay, Nurettin
Nergiz, Zeliş
Karakadioğlu, Gözde
Paydos, Seyide Seda
Kulakman, Cahine
Ferah, Cengiz Kaan
Güven, Ömür
Atalay, Necati
Akcan, Enver Kamil
Cetinok, Haluk
Arslan, Nazlı Eylül
Şabanoğlu, Kardelen
Aşci, Bengisu
Tavli, Serra
Gümüsboğa, Helin
Altuntaş, Sevde
Otsuka, Masami
Fujita, Mikako
Teki̇n, Şaban
Çi̇ftçi̇, Halilibrahim
Durdaği, Serdar
Karaca, Ezgi
Kaplan Türköz, Burcu
Kabasakal, Burak Veli
Kati, Ahmet
DeMi̇rci̇, Hasan
Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
title Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
title_full Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
title_fullStr Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
title_full_unstemmed Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
title_short Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
title_sort rapid and efficient ambient temperature x-ray crystal structure determination at turkish light source
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10198979/
https://www.ncbi.nlm.nih.gov/pubmed/37208392
http://dx.doi.org/10.1038/s41598-023-33989-0
work_keys_str_mv AT gulmehmet rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT ayanesra rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT destanebru rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT johnsonjaustin rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT shafieialaleh rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT kepceogluabdullah rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT yilmazmerve rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT ertemfatmabetul rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT yapiciilkin rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT tosunbilge rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT baldirnilufer rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT tokaynurettin rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT nergizzelis rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT karakadioglugozde rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT paydosseyideseda rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT kulakmancahine rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT ferahcengizkaan rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT guvenomur rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT atalaynecati rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT akcanenverkamil rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT cetinokhaluk rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT arslannazlıeylul rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT sabanoglukardelen rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT ascibengisu rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT tavliserra rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT gumusbogahelin rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT altuntassevde rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT otsukamasami rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT fujitamikako rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT tekinsaban rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT ciftcihalilibrahim rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT durdagiserdar rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT karacaezgi rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT kaplanturkozburcu rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT kabasakalburakveli rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT katiahmet rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource
AT demircihasan rapidandefficientambienttemperaturexraycrystalstructuredeterminationatturkishlightsource