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Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competit...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10198979/ https://www.ncbi.nlm.nih.gov/pubmed/37208392 http://dx.doi.org/10.1038/s41598-023-33989-0 |
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author | Gul, Mehmet Ayan, Esra Destan, Ebru Johnson, J. Austin Shafiei, Alaleh Kepceoğlu, Abdullah Yilmaz, Merve Ertem, Fatma Betül Yapici, İlkin Tosun, Bilge Baldir, Nilüfer Tokay, Nurettin Nergiz, Zeliş Karakadioğlu, Gözde Paydos, Seyide Seda Kulakman, Cahine Ferah, Cengiz Kaan Güven, Ömür Atalay, Necati Akcan, Enver Kamil Cetinok, Haluk Arslan, Nazlı Eylül Şabanoğlu, Kardelen Aşci, Bengisu Tavli, Serra Gümüsboğa, Helin Altuntaş, Sevde Otsuka, Masami Fujita, Mikako Teki̇n, Şaban Çi̇ftçi̇, Halilibrahim Durdaği, Serdar Karaca, Ezgi Kaplan Türköz, Burcu Kabasakal, Burak Veli Kati, Ahmet DeMi̇rci̇, Hasan |
author_facet | Gul, Mehmet Ayan, Esra Destan, Ebru Johnson, J. Austin Shafiei, Alaleh Kepceoğlu, Abdullah Yilmaz, Merve Ertem, Fatma Betül Yapici, İlkin Tosun, Bilge Baldir, Nilüfer Tokay, Nurettin Nergiz, Zeliş Karakadioğlu, Gözde Paydos, Seyide Seda Kulakman, Cahine Ferah, Cengiz Kaan Güven, Ömür Atalay, Necati Akcan, Enver Kamil Cetinok, Haluk Arslan, Nazlı Eylül Şabanoğlu, Kardelen Aşci, Bengisu Tavli, Serra Gümüsboğa, Helin Altuntaş, Sevde Otsuka, Masami Fujita, Mikako Teki̇n, Şaban Çi̇ftçi̇, Halilibrahim Durdaği, Serdar Karaca, Ezgi Kaplan Türköz, Burcu Kabasakal, Burak Veli Kati, Ahmet DeMi̇rci̇, Hasan |
author_sort | Gul, Mehmet |
collection | PubMed |
description | High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competitive X-ray beamtime. Obtaining a high volume of well-diffracting, sufficient-size crystals while mitigating radiation damage remains a critical bottleneck of serial crystallography. As an alternative, we introduce the plate-reader module adapted for using a 72-well Terasaki plate for biomacromolecule structure determination at a convenience of a home X-ray source. We also present the first ambient temperature lysozyme structure determined at the Turkish light source (Turkish DeLight). The complete dataset was collected in 18.5 min with resolution extending to 2.39 Å and 100% completeness. Combined with our previous cryogenic structure (PDB ID: 7Y6A), the ambient temperature structure provides invaluable information about the structural dynamics of the lysozyme. Turkish DeLight provides robust and rapid ambient temperature biomacromolecular structure determination with limited radiation damage. |
format | Online Article Text |
id | pubmed-10198979 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101989792023-05-21 Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source Gul, Mehmet Ayan, Esra Destan, Ebru Johnson, J. Austin Shafiei, Alaleh Kepceoğlu, Abdullah Yilmaz, Merve Ertem, Fatma Betül Yapici, İlkin Tosun, Bilge Baldir, Nilüfer Tokay, Nurettin Nergiz, Zeliş Karakadioğlu, Gözde Paydos, Seyide Seda Kulakman, Cahine Ferah, Cengiz Kaan Güven, Ömür Atalay, Necati Akcan, Enver Kamil Cetinok, Haluk Arslan, Nazlı Eylül Şabanoğlu, Kardelen Aşci, Bengisu Tavli, Serra Gümüsboğa, Helin Altuntaş, Sevde Otsuka, Masami Fujita, Mikako Teki̇n, Şaban Çi̇ftçi̇, Halilibrahim Durdaği, Serdar Karaca, Ezgi Kaplan Türköz, Burcu Kabasakal, Burak Veli Kati, Ahmet DeMi̇rci̇, Hasan Sci Rep Article High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competitive X-ray beamtime. Obtaining a high volume of well-diffracting, sufficient-size crystals while mitigating radiation damage remains a critical bottleneck of serial crystallography. As an alternative, we introduce the plate-reader module adapted for using a 72-well Terasaki plate for biomacromolecule structure determination at a convenience of a home X-ray source. We also present the first ambient temperature lysozyme structure determined at the Turkish light source (Turkish DeLight). The complete dataset was collected in 18.5 min with resolution extending to 2.39 Å and 100% completeness. Combined with our previous cryogenic structure (PDB ID: 7Y6A), the ambient temperature structure provides invaluable information about the structural dynamics of the lysozyme. Turkish DeLight provides robust and rapid ambient temperature biomacromolecular structure determination with limited radiation damage. Nature Publishing Group UK 2023-05-19 /pmc/articles/PMC10198979/ /pubmed/37208392 http://dx.doi.org/10.1038/s41598-023-33989-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Gul, Mehmet Ayan, Esra Destan, Ebru Johnson, J. Austin Shafiei, Alaleh Kepceoğlu, Abdullah Yilmaz, Merve Ertem, Fatma Betül Yapici, İlkin Tosun, Bilge Baldir, Nilüfer Tokay, Nurettin Nergiz, Zeliş Karakadioğlu, Gözde Paydos, Seyide Seda Kulakman, Cahine Ferah, Cengiz Kaan Güven, Ömür Atalay, Necati Akcan, Enver Kamil Cetinok, Haluk Arslan, Nazlı Eylül Şabanoğlu, Kardelen Aşci, Bengisu Tavli, Serra Gümüsboğa, Helin Altuntaş, Sevde Otsuka, Masami Fujita, Mikako Teki̇n, Şaban Çi̇ftçi̇, Halilibrahim Durdaği, Serdar Karaca, Ezgi Kaplan Türköz, Burcu Kabasakal, Burak Veli Kati, Ahmet DeMi̇rci̇, Hasan Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source |
title | Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source |
title_full | Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source |
title_fullStr | Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source |
title_full_unstemmed | Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source |
title_short | Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source |
title_sort | rapid and efficient ambient temperature x-ray crystal structure determination at turkish light source |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10198979/ https://www.ncbi.nlm.nih.gov/pubmed/37208392 http://dx.doi.org/10.1038/s41598-023-33989-0 |
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