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Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru

Lomas formations or “fog oases” are islands of vegetation in the desert belt of the west coast of South America, with a unique vegetation composition among the world’s deserts. However, plant diversity and conservation studies have long been neglected, and there exists a severe gap in plant DNA sequ...

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Autores principales: Song, Feng, Deng, Yun-Fei, Yan, Hai-Fei, Lin, Zhe-Li, Delgado, Amalia, Trinidad, Huber, Gonzales-Arce, Paúl, Riva, Sebastián, Cano-Echevarría, Asunción, Ramos, Elmer, Aroni, Yaquelin Pamela, Rivera, Soledad, Arakaki, Mónica, Ge, Xue-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199014/
https://www.ncbi.nlm.nih.gov/pubmed/37208352
http://dx.doi.org/10.1038/s41597-023-02206-y
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author Song, Feng
Deng, Yun-Fei
Yan, Hai-Fei
Lin, Zhe-Li
Delgado, Amalia
Trinidad, Huber
Gonzales-Arce, Paúl
Riva, Sebastián
Cano-Echevarría, Asunción
Ramos, Elmer
Aroni, Yaquelin Pamela
Rivera, Soledad
Arakaki, Mónica
Ge, Xue-Jun
author_facet Song, Feng
Deng, Yun-Fei
Yan, Hai-Fei
Lin, Zhe-Li
Delgado, Amalia
Trinidad, Huber
Gonzales-Arce, Paúl
Riva, Sebastián
Cano-Echevarría, Asunción
Ramos, Elmer
Aroni, Yaquelin Pamela
Rivera, Soledad
Arakaki, Mónica
Ge, Xue-Jun
author_sort Song, Feng
collection PubMed
description Lomas formations or “fog oases” are islands of vegetation in the desert belt of the west coast of South America, with a unique vegetation composition among the world’s deserts. However, plant diversity and conservation studies have long been neglected, and there exists a severe gap in plant DNA sequence information. To address the lack of DNA information, we conducted field collections and laboratory DNA sequencing to establish a DNA barcode reference library of Lomas plants from Peru. This database provides 1,207 plant specimens and 3,129 DNA barcodes data corresponding with collections from 16 Lomas locations in Peru, during 2017 and 2018. This database will facilitate both rapid species identification and basic studies on plant diversity, thereby enhancing our understanding of Lomas flora’s composition and temporal variation, and providing valuable resources for conserving plant diversity and maintaining the stability of the fragile Lomas ecosystems.
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spelling pubmed-101990142023-05-21 Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru Song, Feng Deng, Yun-Fei Yan, Hai-Fei Lin, Zhe-Li Delgado, Amalia Trinidad, Huber Gonzales-Arce, Paúl Riva, Sebastián Cano-Echevarría, Asunción Ramos, Elmer Aroni, Yaquelin Pamela Rivera, Soledad Arakaki, Mónica Ge, Xue-Jun Sci Data Data Descriptor Lomas formations or “fog oases” are islands of vegetation in the desert belt of the west coast of South America, with a unique vegetation composition among the world’s deserts. However, plant diversity and conservation studies have long been neglected, and there exists a severe gap in plant DNA sequence information. To address the lack of DNA information, we conducted field collections and laboratory DNA sequencing to establish a DNA barcode reference library of Lomas plants from Peru. This database provides 1,207 plant specimens and 3,129 DNA barcodes data corresponding with collections from 16 Lomas locations in Peru, during 2017 and 2018. This database will facilitate both rapid species identification and basic studies on plant diversity, thereby enhancing our understanding of Lomas flora’s composition and temporal variation, and providing valuable resources for conserving plant diversity and maintaining the stability of the fragile Lomas ecosystems. Nature Publishing Group UK 2023-05-19 /pmc/articles/PMC10199014/ /pubmed/37208352 http://dx.doi.org/10.1038/s41597-023-02206-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Song, Feng
Deng, Yun-Fei
Yan, Hai-Fei
Lin, Zhe-Li
Delgado, Amalia
Trinidad, Huber
Gonzales-Arce, Paúl
Riva, Sebastián
Cano-Echevarría, Asunción
Ramos, Elmer
Aroni, Yaquelin Pamela
Rivera, Soledad
Arakaki, Mónica
Ge, Xue-Jun
Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru
title Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru
title_full Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru
title_fullStr Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru
title_full_unstemmed Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru
title_short Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru
title_sort flora diversity survey and establishment of a plant dna barcode database of lomas ecosystems in peru
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199014/
https://www.ncbi.nlm.nih.gov/pubmed/37208352
http://dx.doi.org/10.1038/s41597-023-02206-y
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