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Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation

To increase the accuracy of medical image analysis using supervised learning-based AI technology, a large amount of accurately labeled training data is required. However, the supervised learning approach may not be applicable to real-world medical imaging due to the lack of labeled data, the privacy...

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Autores principales: Kim, Yeongjoon, Kang, Donggoo, Mok, Yeongheon, Kwon, Sunkyu, Paik, Joonki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199045/
https://www.ncbi.nlm.nih.gov/pubmed/37208448
http://dx.doi.org/10.1038/s41598-023-35276-4
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author Kim, Yeongjoon
Kang, Donggoo
Mok, Yeongheon
Kwon, Sunkyu
Paik, Joonki
author_facet Kim, Yeongjoon
Kang, Donggoo
Mok, Yeongheon
Kwon, Sunkyu
Paik, Joonki
author_sort Kim, Yeongjoon
collection PubMed
description To increase the accuracy of medical image analysis using supervised learning-based AI technology, a large amount of accurately labeled training data is required. However, the supervised learning approach may not be applicable to real-world medical imaging due to the lack of labeled data, the privacy of patients, and the cost of specialized knowledge. To handle these issues, we utilized Kronecker-factored decomposition, which enhances both computational efficiency and stability of the learning process. We combined this approach with a model-agnostic meta-learning framework for the parameter optimization. Based on this method, we present a bidirectional meta-Kronecker factored optimizer (BM-KFO) framework to quickly optimize semantic segmentation tasks using just a few magnetic resonance imaging (MRI) images as input. This model-agnostic approach can be implemented without altering network components and is capable of learning the learning process and meta-initial points while training on previously unseen data. We also incorporated a combination of average Hausdorff distance loss (AHD-loss) and cross-entropy loss into our objective function to specifically target the morphology of organs or lesions in medical images. Through evaluation of the proposed method on the abdominal MRI dataset, we obtained an average performance of 78.07% in setting 1 and 79.85% in setting 2. Our experiments demonstrate that BM-KFO with AHD-loss is suitable for general medical image segmentation applications and achieves superior performance compared to the baseline method in few-shot learning tasks. In order to replicate the proposed method, we have shared our code on GitHub. The corresponding URL can be found: https://github.com/YeongjoonKim/BMKFO.git.
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spelling pubmed-101990452023-05-21 Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation Kim, Yeongjoon Kang, Donggoo Mok, Yeongheon Kwon, Sunkyu Paik, Joonki Sci Rep Article To increase the accuracy of medical image analysis using supervised learning-based AI technology, a large amount of accurately labeled training data is required. However, the supervised learning approach may not be applicable to real-world medical imaging due to the lack of labeled data, the privacy of patients, and the cost of specialized knowledge. To handle these issues, we utilized Kronecker-factored decomposition, which enhances both computational efficiency and stability of the learning process. We combined this approach with a model-agnostic meta-learning framework for the parameter optimization. Based on this method, we present a bidirectional meta-Kronecker factored optimizer (BM-KFO) framework to quickly optimize semantic segmentation tasks using just a few magnetic resonance imaging (MRI) images as input. This model-agnostic approach can be implemented without altering network components and is capable of learning the learning process and meta-initial points while training on previously unseen data. We also incorporated a combination of average Hausdorff distance loss (AHD-loss) and cross-entropy loss into our objective function to specifically target the morphology of organs or lesions in medical images. Through evaluation of the proposed method on the abdominal MRI dataset, we obtained an average performance of 78.07% in setting 1 and 79.85% in setting 2. Our experiments demonstrate that BM-KFO with AHD-loss is suitable for general medical image segmentation applications and achieves superior performance compared to the baseline method in few-shot learning tasks. In order to replicate the proposed method, we have shared our code on GitHub. The corresponding URL can be found: https://github.com/YeongjoonKim/BMKFO.git. Nature Publishing Group UK 2023-05-19 /pmc/articles/PMC10199045/ /pubmed/37208448 http://dx.doi.org/10.1038/s41598-023-35276-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kim, Yeongjoon
Kang, Donggoo
Mok, Yeongheon
Kwon, Sunkyu
Paik, Joonki
Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation
title Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation
title_full Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation
title_fullStr Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation
title_full_unstemmed Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation
title_short Bidirectional meta-Kronecker factored optimizer and Hausdorff distance loss for few-shot medical image segmentation
title_sort bidirectional meta-kronecker factored optimizer and hausdorff distance loss for few-shot medical image segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199045/
https://www.ncbi.nlm.nih.gov/pubmed/37208448
http://dx.doi.org/10.1038/s41598-023-35276-4
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