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VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation

Applying deep learning to images of cropping systems provides new knowledge and insights in research and commercial applications. Semantic segmentation or pixel-wise classification, of RGB images acquired at the ground level, into vegetation and background is a critical step in the estimation of sev...

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Autores principales: Madec, Simon, Irfan, Kamran, Velumani, Kaaviya, Baret, Frederic, David, Etienne, Daubige, Gaetan, Samatan, Lucas Bernigaud, Serouart, Mario, Smith, Daniel, James, Chrisbin, Camacho, Fernando, Guo, Wei, De Solan, Benoit, Chapman, Scott C., Weiss, Marie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199053/
https://www.ncbi.nlm.nih.gov/pubmed/37208401
http://dx.doi.org/10.1038/s41597-023-02098-y
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author Madec, Simon
Irfan, Kamran
Velumani, Kaaviya
Baret, Frederic
David, Etienne
Daubige, Gaetan
Samatan, Lucas Bernigaud
Serouart, Mario
Smith, Daniel
James, Chrisbin
Camacho, Fernando
Guo, Wei
De Solan, Benoit
Chapman, Scott C.
Weiss, Marie
author_facet Madec, Simon
Irfan, Kamran
Velumani, Kaaviya
Baret, Frederic
David, Etienne
Daubige, Gaetan
Samatan, Lucas Bernigaud
Serouart, Mario
Smith, Daniel
James, Chrisbin
Camacho, Fernando
Guo, Wei
De Solan, Benoit
Chapman, Scott C.
Weiss, Marie
author_sort Madec, Simon
collection PubMed
description Applying deep learning to images of cropping systems provides new knowledge and insights in research and commercial applications. Semantic segmentation or pixel-wise classification, of RGB images acquired at the ground level, into vegetation and background is a critical step in the estimation of several canopy traits. Current state of the art methodologies based on convolutional neural networks (CNNs) are trained on datasets acquired under controlled or indoor environments. These models are unable to generalize to real-world images and hence need to be fine-tuned using new labelled datasets. This motivated the creation of the VegAnn - Vegetation Annotation - dataset, a collection of 3775 multi-crop RGB images acquired for different phenological stages using different systems and platforms in diverse illumination conditions. We anticipate that VegAnn will help improving segmentation algorithm performances, facilitate benchmarking and promote large-scale crop vegetation segmentation research.
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spelling pubmed-101990532023-05-21 VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation Madec, Simon Irfan, Kamran Velumani, Kaaviya Baret, Frederic David, Etienne Daubige, Gaetan Samatan, Lucas Bernigaud Serouart, Mario Smith, Daniel James, Chrisbin Camacho, Fernando Guo, Wei De Solan, Benoit Chapman, Scott C. Weiss, Marie Sci Data Data Descriptor Applying deep learning to images of cropping systems provides new knowledge and insights in research and commercial applications. Semantic segmentation or pixel-wise classification, of RGB images acquired at the ground level, into vegetation and background is a critical step in the estimation of several canopy traits. Current state of the art methodologies based on convolutional neural networks (CNNs) are trained on datasets acquired under controlled or indoor environments. These models are unable to generalize to real-world images and hence need to be fine-tuned using new labelled datasets. This motivated the creation of the VegAnn - Vegetation Annotation - dataset, a collection of 3775 multi-crop RGB images acquired for different phenological stages using different systems and platforms in diverse illumination conditions. We anticipate that VegAnn will help improving segmentation algorithm performances, facilitate benchmarking and promote large-scale crop vegetation segmentation research. Nature Publishing Group UK 2023-05-19 /pmc/articles/PMC10199053/ /pubmed/37208401 http://dx.doi.org/10.1038/s41597-023-02098-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Madec, Simon
Irfan, Kamran
Velumani, Kaaviya
Baret, Frederic
David, Etienne
Daubige, Gaetan
Samatan, Lucas Bernigaud
Serouart, Mario
Smith, Daniel
James, Chrisbin
Camacho, Fernando
Guo, Wei
De Solan, Benoit
Chapman, Scott C.
Weiss, Marie
VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation
title VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation
title_full VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation
title_fullStr VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation
title_full_unstemmed VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation
title_short VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation
title_sort vegann, vegetation annotation of multi-crop rgb images acquired under diverse conditions for segmentation
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199053/
https://www.ncbi.nlm.nih.gov/pubmed/37208401
http://dx.doi.org/10.1038/s41597-023-02098-y
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