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Bayesian forecasting of disease spread with little or no local data

Rapid and targeted management actions are a prerequisite to efficiently mitigate disease outbreaks. Targeted actions, however, require accurate spatial information on disease occurrence and spread. Frequently, targeted management actions are guided by non-statistical approaches that define the affec...

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Autores principales: Cook, Jonathan D., Williams, David M., Walsh, Daniel P., Hefley, Trevor J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199067/
https://www.ncbi.nlm.nih.gov/pubmed/37208385
http://dx.doi.org/10.1038/s41598-023-35177-6
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author Cook, Jonathan D.
Williams, David M.
Walsh, Daniel P.
Hefley, Trevor J.
author_facet Cook, Jonathan D.
Williams, David M.
Walsh, Daniel P.
Hefley, Trevor J.
author_sort Cook, Jonathan D.
collection PubMed
description Rapid and targeted management actions are a prerequisite to efficiently mitigate disease outbreaks. Targeted actions, however, require accurate spatial information on disease occurrence and spread. Frequently, targeted management actions are guided by non-statistical approaches that define the affected area by a pre-determined distance surrounding a small number of disease detections. As an alternative, we present a long-recognized but underutilized Bayesian technique that uses limited local data and informative priors to make statistically valid predictions and forecasts about disease occurrence and spread. As a case study, we use limited local data that were available after the detection of chronic wasting disease in Michigan, U.S. along with information rich priors obtained from a previous study in a neighboring state. Using these limited local data and informative priors, we generate statistically valid predictions of disease occurrence and spread for the Michigan study area. This Bayesian technique is conceptually and computationally simple, relies on little to no local data, and is competitive with non-statistical distance-based metrics in all performance evaluations. Bayesian modeling has added benefits because it allows practitioners to generate immediate forecasts of future disease conditions and provides a principled framework to incorporate new data as they accumulate. We contend that the Bayesian technique offers broad-scale benefits and opportunities to make statistical inference across a diversity of data-deficient systems, not limited to disease.
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spelling pubmed-101990672023-05-21 Bayesian forecasting of disease spread with little or no local data Cook, Jonathan D. Williams, David M. Walsh, Daniel P. Hefley, Trevor J. Sci Rep Article Rapid and targeted management actions are a prerequisite to efficiently mitigate disease outbreaks. Targeted actions, however, require accurate spatial information on disease occurrence and spread. Frequently, targeted management actions are guided by non-statistical approaches that define the affected area by a pre-determined distance surrounding a small number of disease detections. As an alternative, we present a long-recognized but underutilized Bayesian technique that uses limited local data and informative priors to make statistically valid predictions and forecasts about disease occurrence and spread. As a case study, we use limited local data that were available after the detection of chronic wasting disease in Michigan, U.S. along with information rich priors obtained from a previous study in a neighboring state. Using these limited local data and informative priors, we generate statistically valid predictions of disease occurrence and spread for the Michigan study area. This Bayesian technique is conceptually and computationally simple, relies on little to no local data, and is competitive with non-statistical distance-based metrics in all performance evaluations. Bayesian modeling has added benefits because it allows practitioners to generate immediate forecasts of future disease conditions and provides a principled framework to incorporate new data as they accumulate. We contend that the Bayesian technique offers broad-scale benefits and opportunities to make statistical inference across a diversity of data-deficient systems, not limited to disease. Nature Publishing Group UK 2023-05-19 /pmc/articles/PMC10199067/ /pubmed/37208385 http://dx.doi.org/10.1038/s41598-023-35177-6 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Cook, Jonathan D.
Williams, David M.
Walsh, Daniel P.
Hefley, Trevor J.
Bayesian forecasting of disease spread with little or no local data
title Bayesian forecasting of disease spread with little or no local data
title_full Bayesian forecasting of disease spread with little or no local data
title_fullStr Bayesian forecasting of disease spread with little or no local data
title_full_unstemmed Bayesian forecasting of disease spread with little or no local data
title_short Bayesian forecasting of disease spread with little or no local data
title_sort bayesian forecasting of disease spread with little or no local data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199067/
https://www.ncbi.nlm.nih.gov/pubmed/37208385
http://dx.doi.org/10.1038/s41598-023-35177-6
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