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Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene

The Glossogobius species play an essential role in food supply and are distributed widely from the marine to freshwater, especially in the Mekong Delta, Vietnam (VMD). Some of their morphometrics and meristics are observed to vary with species and sampling sites. Therefore, the present study aims to...

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Autores principales: Phan, Gieo Hoang, Lam, Tran Thi Huyen, Dinh, Quang Minh, Nguyen, Ton Huu Duc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199184/
https://www.ncbi.nlm.nih.gov/pubmed/37215891
http://dx.doi.org/10.1016/j.heliyon.2023.e16106
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author Phan, Gieo Hoang
Lam, Tran Thi Huyen
Dinh, Quang Minh
Nguyen, Ton Huu Duc
author_facet Phan, Gieo Hoang
Lam, Tran Thi Huyen
Dinh, Quang Minh
Nguyen, Ton Huu Duc
author_sort Phan, Gieo Hoang
collection PubMed
description The Glossogobius species play an essential role in food supply and are distributed widely from the marine to freshwater, especially in the Mekong Delta, Vietnam (VMD). Some of their morphometrics and meristics are observed to vary with species and sampling sites. Therefore, the present study aims to verify if their mitochondrial Cytochrome b (Cytb) gene, one of the popular gene sequences used in fish phylogenic variation assessment, varies with species and sampling sites in the VMD. The Cytb gene size was 1300 bp for GcytbH/GcytbL primer pair and 1045 bp for GluMuq1-F/Mixcyto937-2R. The genetic distances within and among these three fish species groups were 0–11%. The Cytb gene sequences’ similarity between this study and the NCBI database was 85.84–100%. The Glossogobius specimens were observed to disperse in small branches of the phylogenetic tree with a low K2P value, suggesting that the Cytb genetic diversity may be low among species.
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spelling pubmed-101991842023-05-21 Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene Phan, Gieo Hoang Lam, Tran Thi Huyen Dinh, Quang Minh Nguyen, Ton Huu Duc Heliyon Research Article The Glossogobius species play an essential role in food supply and are distributed widely from the marine to freshwater, especially in the Mekong Delta, Vietnam (VMD). Some of their morphometrics and meristics are observed to vary with species and sampling sites. Therefore, the present study aims to verify if their mitochondrial Cytochrome b (Cytb) gene, one of the popular gene sequences used in fish phylogenic variation assessment, varies with species and sampling sites in the VMD. The Cytb gene size was 1300 bp for GcytbH/GcytbL primer pair and 1045 bp for GluMuq1-F/Mixcyto937-2R. The genetic distances within and among these three fish species groups were 0–11%. The Cytb gene sequences’ similarity between this study and the NCBI database was 85.84–100%. The Glossogobius specimens were observed to disperse in small branches of the phylogenetic tree with a low K2P value, suggesting that the Cytb genetic diversity may be low among species. Elsevier 2023-05-10 /pmc/articles/PMC10199184/ /pubmed/37215891 http://dx.doi.org/10.1016/j.heliyon.2023.e16106 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Phan, Gieo Hoang
Lam, Tran Thi Huyen
Dinh, Quang Minh
Nguyen, Ton Huu Duc
Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
title Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
title_full Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
title_fullStr Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
title_full_unstemmed Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
title_short Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
title_sort phylogenics of the genus glossogobius in the mekong delta based on the mitochondrial cytochrome b (cytb) gene
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199184/
https://www.ncbi.nlm.nih.gov/pubmed/37215891
http://dx.doi.org/10.1016/j.heliyon.2023.e16106
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