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Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
The Glossogobius species play an essential role in food supply and are distributed widely from the marine to freshwater, especially in the Mekong Delta, Vietnam (VMD). Some of their morphometrics and meristics are observed to vary with species and sampling sites. Therefore, the present study aims to...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199184/ https://www.ncbi.nlm.nih.gov/pubmed/37215891 http://dx.doi.org/10.1016/j.heliyon.2023.e16106 |
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author | Phan, Gieo Hoang Lam, Tran Thi Huyen Dinh, Quang Minh Nguyen, Ton Huu Duc |
author_facet | Phan, Gieo Hoang Lam, Tran Thi Huyen Dinh, Quang Minh Nguyen, Ton Huu Duc |
author_sort | Phan, Gieo Hoang |
collection | PubMed |
description | The Glossogobius species play an essential role in food supply and are distributed widely from the marine to freshwater, especially in the Mekong Delta, Vietnam (VMD). Some of their morphometrics and meristics are observed to vary with species and sampling sites. Therefore, the present study aims to verify if their mitochondrial Cytochrome b (Cytb) gene, one of the popular gene sequences used in fish phylogenic variation assessment, varies with species and sampling sites in the VMD. The Cytb gene size was 1300 bp for GcytbH/GcytbL primer pair and 1045 bp for GluMuq1-F/Mixcyto937-2R. The genetic distances within and among these three fish species groups were 0–11%. The Cytb gene sequences’ similarity between this study and the NCBI database was 85.84–100%. The Glossogobius specimens were observed to disperse in small branches of the phylogenetic tree with a low K2P value, suggesting that the Cytb genetic diversity may be low among species. |
format | Online Article Text |
id | pubmed-10199184 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-101991842023-05-21 Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene Phan, Gieo Hoang Lam, Tran Thi Huyen Dinh, Quang Minh Nguyen, Ton Huu Duc Heliyon Research Article The Glossogobius species play an essential role in food supply and are distributed widely from the marine to freshwater, especially in the Mekong Delta, Vietnam (VMD). Some of their morphometrics and meristics are observed to vary with species and sampling sites. Therefore, the present study aims to verify if their mitochondrial Cytochrome b (Cytb) gene, one of the popular gene sequences used in fish phylogenic variation assessment, varies with species and sampling sites in the VMD. The Cytb gene size was 1300 bp for GcytbH/GcytbL primer pair and 1045 bp for GluMuq1-F/Mixcyto937-2R. The genetic distances within and among these three fish species groups were 0–11%. The Cytb gene sequences’ similarity between this study and the NCBI database was 85.84–100%. The Glossogobius specimens were observed to disperse in small branches of the phylogenetic tree with a low K2P value, suggesting that the Cytb genetic diversity may be low among species. Elsevier 2023-05-10 /pmc/articles/PMC10199184/ /pubmed/37215891 http://dx.doi.org/10.1016/j.heliyon.2023.e16106 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Phan, Gieo Hoang Lam, Tran Thi Huyen Dinh, Quang Minh Nguyen, Ton Huu Duc Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene |
title | Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene |
title_full | Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene |
title_fullStr | Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene |
title_full_unstemmed | Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene |
title_short | Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene |
title_sort | phylogenics of the genus glossogobius in the mekong delta based on the mitochondrial cytochrome b (cytb) gene |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199184/ https://www.ncbi.nlm.nih.gov/pubmed/37215891 http://dx.doi.org/10.1016/j.heliyon.2023.e16106 |
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