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Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage

To better determine how gamma irradiation (GI) improves abiotic stress resistance, a transcriptome analysis of postharvest L. edodes in response to 1.0 kGy GI was conducted, and further the underlying mechanism of GI in delaying quality deterioration over 20 d of cold storage was explored. The resul...

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Autores principales: Gao, Hong, Ye, Shuang, Liu, Yani, Fan, Xiuzhi, Yin, Chaomin, Liu, Ying, Liu, Jingyu, Qiao, Yu, Chen, Xueling, Yao, Fen, Shi, Defang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199187/
https://www.ncbi.nlm.nih.gov/pubmed/37213208
http://dx.doi.org/10.1016/j.fochms.2023.100172
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author Gao, Hong
Ye, Shuang
Liu, Yani
Fan, Xiuzhi
Yin, Chaomin
Liu, Ying
Liu, Jingyu
Qiao, Yu
Chen, Xueling
Yao, Fen
Shi, Defang
author_facet Gao, Hong
Ye, Shuang
Liu, Yani
Fan, Xiuzhi
Yin, Chaomin
Liu, Ying
Liu, Jingyu
Qiao, Yu
Chen, Xueling
Yao, Fen
Shi, Defang
author_sort Gao, Hong
collection PubMed
description To better determine how gamma irradiation (GI) improves abiotic stress resistance, a transcriptome analysis of postharvest L. edodes in response to 1.0 kGy GI was conducted, and further the underlying mechanism of GI in delaying quality deterioration over 20 d of cold storage was explored. The results suggested that GI was involved in multiple metabolic processes in irradiated postharvest L. edodes. In comparison with the control group, the GI group contained 430 differentially expressed genes, including 151 upregulated genes and 279 downregulated genes, which unveiled characteristic expression profiles and pathways. The genes involved in the pentose phosphate pathway were mainly upregulated and the expression level of the gene encoding deoxy-D-gluconate 3-dehydrogenase was 9.151-fold higher. In contrast, the genes related to other energy metabolism pathways were downregulated. Concurrently, GI inhibited the expression of genes associated with delta 9-fatty acid desaturase, ribosomes, and HSP20; thus, GI helped postpone the degradation of lipid components, suppress transcriptional metabolism and regulate the stress response. Additionally, the metabolic behavior of DNA repair induced by GI intensified by noticeable upregulation. These regulatory effects could play a potential and nonnegligible role in delaying the deterioration of L. edodes quality. The results provide new information on the regulatory mechanism of postharvest L. edodes when subjected to 1.0 kGy GI during cold storage.
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spelling pubmed-101991872023-05-21 Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage Gao, Hong Ye, Shuang Liu, Yani Fan, Xiuzhi Yin, Chaomin Liu, Ying Liu, Jingyu Qiao, Yu Chen, Xueling Yao, Fen Shi, Defang Food Chem (Oxf) Research Article To better determine how gamma irradiation (GI) improves abiotic stress resistance, a transcriptome analysis of postharvest L. edodes in response to 1.0 kGy GI was conducted, and further the underlying mechanism of GI in delaying quality deterioration over 20 d of cold storage was explored. The results suggested that GI was involved in multiple metabolic processes in irradiated postharvest L. edodes. In comparison with the control group, the GI group contained 430 differentially expressed genes, including 151 upregulated genes and 279 downregulated genes, which unveiled characteristic expression profiles and pathways. The genes involved in the pentose phosphate pathway were mainly upregulated and the expression level of the gene encoding deoxy-D-gluconate 3-dehydrogenase was 9.151-fold higher. In contrast, the genes related to other energy metabolism pathways were downregulated. Concurrently, GI inhibited the expression of genes associated with delta 9-fatty acid desaturase, ribosomes, and HSP20; thus, GI helped postpone the degradation of lipid components, suppress transcriptional metabolism and regulate the stress response. Additionally, the metabolic behavior of DNA repair induced by GI intensified by noticeable upregulation. These regulatory effects could play a potential and nonnegligible role in delaying the deterioration of L. edodes quality. The results provide new information on the regulatory mechanism of postharvest L. edodes when subjected to 1.0 kGy GI during cold storage. Elsevier 2023-05-09 /pmc/articles/PMC10199187/ /pubmed/37213208 http://dx.doi.org/10.1016/j.fochms.2023.100172 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Gao, Hong
Ye, Shuang
Liu, Yani
Fan, Xiuzhi
Yin, Chaomin
Liu, Ying
Liu, Jingyu
Qiao, Yu
Chen, Xueling
Yao, Fen
Shi, Defang
Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage
title Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage
title_full Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage
title_fullStr Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage
title_full_unstemmed Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage
title_short Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage
title_sort transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest lentinula edodes during cold storage
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10199187/
https://www.ncbi.nlm.nih.gov/pubmed/37213208
http://dx.doi.org/10.1016/j.fochms.2023.100172
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