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The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella

The establishment of Arabidopsis as the most important plant model has also brought other crucifer species into the spotlight of comparative research. While the genus Capsella has become a prominent crucifer model system, its closest relative has been overlooked. The unispecific genus Catolobus is n...

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Autores principales: Farhat, Perla, Mandáková, Terezie, Divíšek, Jan, Kudoh, Hiroshi, German, Dmitry A., Lysak, Martin A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10200890/
https://www.ncbi.nlm.nih.gov/pubmed/37223809
http://dx.doi.org/10.3389/fpls.2023.1165140
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author Farhat, Perla
Mandáková, Terezie
Divíšek, Jan
Kudoh, Hiroshi
German, Dmitry A.
Lysak, Martin A.
author_facet Farhat, Perla
Mandáková, Terezie
Divíšek, Jan
Kudoh, Hiroshi
German, Dmitry A.
Lysak, Martin A.
author_sort Farhat, Perla
collection PubMed
description The establishment of Arabidopsis as the most important plant model has also brought other crucifer species into the spotlight of comparative research. While the genus Capsella has become a prominent crucifer model system, its closest relative has been overlooked. The unispecific genus Catolobus is native to temperate Eurasian woodlands, from eastern Europe to the Russian Far East. Here, we analyzed chromosome number, genome structure, intraspecific genetic variation, and habitat suitability of Catolobus pendulus throughout its range. Unexpectedly, all analyzed populations were hypotetraploid (2n = 30, ~330 Mb). Comparative cytogenomic analysis revealed that the Catolobus genome arose by a whole-genome duplication in a diploid genome resembling Ancestral Crucifer Karyotype (ACK, n = 8). In contrast to the much younger Capsella allotetraploid genomes, the presumably autotetraploid Catolobus genome (2n = 32) arose early after the Catolobus/Capsella divergence. Since its origin, the tetraploid Catolobus genome has undergone chromosomal rediploidization, including a reduction in chromosome number from 2n = 32 to 2n = 30. Diploidization occurred through end-to-end chromosome fusion and other chromosomal rearrangements affecting a total of six of 16 ancestral chromosomes. The hypotetraploid Catolobus cytotype expanded toward its present range, accompanied by some longitudinal genetic differentiation. The sister relationship between Catolobus and Capsella allows comparative studies of tetraploid genomes of contrasting ages and different degrees of genome diploidization.
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spelling pubmed-102008902023-05-23 The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella Farhat, Perla Mandáková, Terezie Divíšek, Jan Kudoh, Hiroshi German, Dmitry A. Lysak, Martin A. Front Plant Sci Plant Science The establishment of Arabidopsis as the most important plant model has also brought other crucifer species into the spotlight of comparative research. While the genus Capsella has become a prominent crucifer model system, its closest relative has been overlooked. The unispecific genus Catolobus is native to temperate Eurasian woodlands, from eastern Europe to the Russian Far East. Here, we analyzed chromosome number, genome structure, intraspecific genetic variation, and habitat suitability of Catolobus pendulus throughout its range. Unexpectedly, all analyzed populations were hypotetraploid (2n = 30, ~330 Mb). Comparative cytogenomic analysis revealed that the Catolobus genome arose by a whole-genome duplication in a diploid genome resembling Ancestral Crucifer Karyotype (ACK, n = 8). In contrast to the much younger Capsella allotetraploid genomes, the presumably autotetraploid Catolobus genome (2n = 32) arose early after the Catolobus/Capsella divergence. Since its origin, the tetraploid Catolobus genome has undergone chromosomal rediploidization, including a reduction in chromosome number from 2n = 32 to 2n = 30. Diploidization occurred through end-to-end chromosome fusion and other chromosomal rearrangements affecting a total of six of 16 ancestral chromosomes. The hypotetraploid Catolobus cytotype expanded toward its present range, accompanied by some longitudinal genetic differentiation. The sister relationship between Catolobus and Capsella allows comparative studies of tetraploid genomes of contrasting ages and different degrees of genome diploidization. Frontiers Media S.A. 2023-05-08 /pmc/articles/PMC10200890/ /pubmed/37223809 http://dx.doi.org/10.3389/fpls.2023.1165140 Text en Copyright © 2023 Farhat, Mandáková, Divíšek, Kudoh, German and Lysak https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Farhat, Perla
Mandáková, Terezie
Divíšek, Jan
Kudoh, Hiroshi
German, Dmitry A.
Lysak, Martin A.
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
title The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
title_full The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
title_fullStr The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
title_full_unstemmed The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
title_short The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
title_sort evolution of the hypotetraploid catolobus pendulus genome – the poorly known sister species of capsella
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10200890/
https://www.ncbi.nlm.nih.gov/pubmed/37223809
http://dx.doi.org/10.3389/fpls.2023.1165140
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