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Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles
[Image: see text] Intrinsically disordered protein regions (IDRs) make up over 30% of the human proteome and exist in a dynamic conformational ensemble instead of a native, well-folded structure. Tethering IDRs to a surface (for example, the surface of a well-folded region of the same protein) can r...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10201532/ https://www.ncbi.nlm.nih.gov/pubmed/37155239 http://dx.doi.org/10.1021/acs.jpcb.3c00698 |
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author | Yu, Feng Sukenik, Shahar |
author_facet | Yu, Feng Sukenik, Shahar |
author_sort | Yu, Feng |
collection | PubMed |
description | [Image: see text] Intrinsically disordered protein regions (IDRs) make up over 30% of the human proteome and exist in a dynamic conformational ensemble instead of a native, well-folded structure. Tethering IDRs to a surface (for example, the surface of a well-folded region of the same protein) can reduce the number of accessible conformations in these ensembles. This reduces the ensemble’s conformational entropy, generating an effective entropic force that pulls away from the point of tethering. Recent experimental work has shown that this entropic force causes measurable, physiologically relevant changes to protein function. But how the magnitude of this force depends on IDR sequence remains unexplored. Here, we use all-atom simulations to analyze how structural preferences in IDR ensembles contribute to the entropic force they exert upon tethering. We show that sequence-encoded structural preferences play an important role in determining the magnitude of this force: compact, spherical ensembles generate an entropic force that can be several times higher than more extended ensembles. We further show that changes in the surrounding solution’s chemistry can modulate the IDR entropic force strength. We propose that the entropic force is a sequence-dependent, environmentally tunable property of terminal IDR sequences. |
format | Online Article Text |
id | pubmed-10201532 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-102015322023-05-23 Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles Yu, Feng Sukenik, Shahar J Phys Chem B [Image: see text] Intrinsically disordered protein regions (IDRs) make up over 30% of the human proteome and exist in a dynamic conformational ensemble instead of a native, well-folded structure. Tethering IDRs to a surface (for example, the surface of a well-folded region of the same protein) can reduce the number of accessible conformations in these ensembles. This reduces the ensemble’s conformational entropy, generating an effective entropic force that pulls away from the point of tethering. Recent experimental work has shown that this entropic force causes measurable, physiologically relevant changes to protein function. But how the magnitude of this force depends on IDR sequence remains unexplored. Here, we use all-atom simulations to analyze how structural preferences in IDR ensembles contribute to the entropic force they exert upon tethering. We show that sequence-encoded structural preferences play an important role in determining the magnitude of this force: compact, spherical ensembles generate an entropic force that can be several times higher than more extended ensembles. We further show that changes in the surrounding solution’s chemistry can modulate the IDR entropic force strength. We propose that the entropic force is a sequence-dependent, environmentally tunable property of terminal IDR sequences. American Chemical Society 2023-05-08 /pmc/articles/PMC10201532/ /pubmed/37155239 http://dx.doi.org/10.1021/acs.jpcb.3c00698 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Yu, Feng Sukenik, Shahar Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles |
title | Structural Preferences Shape the Entropic Force of
Disordered Protein Ensembles |
title_full | Structural Preferences Shape the Entropic Force of
Disordered Protein Ensembles |
title_fullStr | Structural Preferences Shape the Entropic Force of
Disordered Protein Ensembles |
title_full_unstemmed | Structural Preferences Shape the Entropic Force of
Disordered Protein Ensembles |
title_short | Structural Preferences Shape the Entropic Force of
Disordered Protein Ensembles |
title_sort | structural preferences shape the entropic force of
disordered protein ensembles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10201532/ https://www.ncbi.nlm.nih.gov/pubmed/37155239 http://dx.doi.org/10.1021/acs.jpcb.3c00698 |
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