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Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles

[Image: see text] Intrinsically disordered protein regions (IDRs) make up over 30% of the human proteome and exist in a dynamic conformational ensemble instead of a native, well-folded structure. Tethering IDRs to a surface (for example, the surface of a well-folded region of the same protein) can r...

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Autores principales: Yu, Feng, Sukenik, Shahar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10201532/
https://www.ncbi.nlm.nih.gov/pubmed/37155239
http://dx.doi.org/10.1021/acs.jpcb.3c00698
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author Yu, Feng
Sukenik, Shahar
author_facet Yu, Feng
Sukenik, Shahar
author_sort Yu, Feng
collection PubMed
description [Image: see text] Intrinsically disordered protein regions (IDRs) make up over 30% of the human proteome and exist in a dynamic conformational ensemble instead of a native, well-folded structure. Tethering IDRs to a surface (for example, the surface of a well-folded region of the same protein) can reduce the number of accessible conformations in these ensembles. This reduces the ensemble’s conformational entropy, generating an effective entropic force that pulls away from the point of tethering. Recent experimental work has shown that this entropic force causes measurable, physiologically relevant changes to protein function. But how the magnitude of this force depends on IDR sequence remains unexplored. Here, we use all-atom simulations to analyze how structural preferences in IDR ensembles contribute to the entropic force they exert upon tethering. We show that sequence-encoded structural preferences play an important role in determining the magnitude of this force: compact, spherical ensembles generate an entropic force that can be several times higher than more extended ensembles. We further show that changes in the surrounding solution’s chemistry can modulate the IDR entropic force strength. We propose that the entropic force is a sequence-dependent, environmentally tunable property of terminal IDR sequences.
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spelling pubmed-102015322023-05-23 Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles Yu, Feng Sukenik, Shahar J Phys Chem B [Image: see text] Intrinsically disordered protein regions (IDRs) make up over 30% of the human proteome and exist in a dynamic conformational ensemble instead of a native, well-folded structure. Tethering IDRs to a surface (for example, the surface of a well-folded region of the same protein) can reduce the number of accessible conformations in these ensembles. This reduces the ensemble’s conformational entropy, generating an effective entropic force that pulls away from the point of tethering. Recent experimental work has shown that this entropic force causes measurable, physiologically relevant changes to protein function. But how the magnitude of this force depends on IDR sequence remains unexplored. Here, we use all-atom simulations to analyze how structural preferences in IDR ensembles contribute to the entropic force they exert upon tethering. We show that sequence-encoded structural preferences play an important role in determining the magnitude of this force: compact, spherical ensembles generate an entropic force that can be several times higher than more extended ensembles. We further show that changes in the surrounding solution’s chemistry can modulate the IDR entropic force strength. We propose that the entropic force is a sequence-dependent, environmentally tunable property of terminal IDR sequences. American Chemical Society 2023-05-08 /pmc/articles/PMC10201532/ /pubmed/37155239 http://dx.doi.org/10.1021/acs.jpcb.3c00698 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Yu, Feng
Sukenik, Shahar
Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles
title Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles
title_full Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles
title_fullStr Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles
title_full_unstemmed Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles
title_short Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles
title_sort structural preferences shape the entropic force of disordered protein ensembles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10201532/
https://www.ncbi.nlm.nih.gov/pubmed/37155239
http://dx.doi.org/10.1021/acs.jpcb.3c00698
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