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Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders

Crop models have been developed for wide research purposes and scales, but they have low compatibility due to the diversity of current modeling studies. Improving model adaptability can lead to model integration. Since deep neural networks have no conventional modeling parameters, diverse input and...

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Detalles Bibliográficos
Autores principales: Moon, Taewon, Kim, Dongpil, Kwon, Sungmin, Son, Jung Eek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AAAS 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10202189/
https://www.ncbi.nlm.nih.gov/pubmed/37223314
http://dx.doi.org/10.34133/plantphenomics.0035
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author Moon, Taewon
Kim, Dongpil
Kwon, Sungmin
Son, Jung Eek
author_facet Moon, Taewon
Kim, Dongpil
Kwon, Sungmin
Son, Jung Eek
author_sort Moon, Taewon
collection PubMed
description Crop models have been developed for wide research purposes and scales, but they have low compatibility due to the diversity of current modeling studies. Improving model adaptability can lead to model integration. Since deep neural networks have no conventional modeling parameters, diverse input and output combinations are possible depending on model training. Despite these advantages, no process-based crop model has been tested in full deep neural network complexes. The objective of this study was to develop a process-based deep learning model for hydroponic sweet peppers. Attention mechanism and multitask learning were selected to process distinct growth factors from the environment sequence. The algorithms were modified to be suitable for the regression task of growth simulation. Cultivations were conducted twice a year for 2 years in greenhouses. The developed crop model, DeepCrop, recorded the highest modeling efficiency (= 0.76) and the lowest normalized mean squared error (= 0.18) compared to accessible crop models in the evaluation with unseen data. The t-distributed stochastic neighbor embedding distribution and the attention weights supported that DeepCrop could be analyzed in terms of cognitive ability. With the high adaptability of DeepCrop, the developed model can replace the existing crop models as a versatile tool that would reveal entangled agricultural systems with analysis of complicated information.
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spelling pubmed-102021892023-05-23 Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders Moon, Taewon Kim, Dongpil Kwon, Sungmin Son, Jung Eek Plant Phenomics Research Article Crop models have been developed for wide research purposes and scales, but they have low compatibility due to the diversity of current modeling studies. Improving model adaptability can lead to model integration. Since deep neural networks have no conventional modeling parameters, diverse input and output combinations are possible depending on model training. Despite these advantages, no process-based crop model has been tested in full deep neural network complexes. The objective of this study was to develop a process-based deep learning model for hydroponic sweet peppers. Attention mechanism and multitask learning were selected to process distinct growth factors from the environment sequence. The algorithms were modified to be suitable for the regression task of growth simulation. Cultivations were conducted twice a year for 2 years in greenhouses. The developed crop model, DeepCrop, recorded the highest modeling efficiency (= 0.76) and the lowest normalized mean squared error (= 0.18) compared to accessible crop models in the evaluation with unseen data. The t-distributed stochastic neighbor embedding distribution and the attention weights supported that DeepCrop could be analyzed in terms of cognitive ability. With the high adaptability of DeepCrop, the developed model can replace the existing crop models as a versatile tool that would reveal entangled agricultural systems with analysis of complicated information. AAAS 2023-04-12 /pmc/articles/PMC10202189/ /pubmed/37223314 http://dx.doi.org/10.34133/plantphenomics.0035 Text en Copyright © 2023 Taewon Moon et al. https://creativecommons.org/licenses/by/4.0/Exclusive Licensee Nanjing Agricultural University. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY 4.0) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Article
Moon, Taewon
Kim, Dongpil
Kwon, Sungmin
Son, Jung Eek
Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders
title Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders
title_full Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders
title_fullStr Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders
title_full_unstemmed Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders
title_short Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders
title_sort process-based crop modeling for high applicability with attention mechanism and multitask decoders
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10202189/
https://www.ncbi.nlm.nih.gov/pubmed/37223314
http://dx.doi.org/10.34133/plantphenomics.0035
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