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Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders
Crop models have been developed for wide research purposes and scales, but they have low compatibility due to the diversity of current modeling studies. Improving model adaptability can lead to model integration. Since deep neural networks have no conventional modeling parameters, diverse input and...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AAAS
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10202189/ https://www.ncbi.nlm.nih.gov/pubmed/37223314 http://dx.doi.org/10.34133/plantphenomics.0035 |
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author | Moon, Taewon Kim, Dongpil Kwon, Sungmin Son, Jung Eek |
author_facet | Moon, Taewon Kim, Dongpil Kwon, Sungmin Son, Jung Eek |
author_sort | Moon, Taewon |
collection | PubMed |
description | Crop models have been developed for wide research purposes and scales, but they have low compatibility due to the diversity of current modeling studies. Improving model adaptability can lead to model integration. Since deep neural networks have no conventional modeling parameters, diverse input and output combinations are possible depending on model training. Despite these advantages, no process-based crop model has been tested in full deep neural network complexes. The objective of this study was to develop a process-based deep learning model for hydroponic sweet peppers. Attention mechanism and multitask learning were selected to process distinct growth factors from the environment sequence. The algorithms were modified to be suitable for the regression task of growth simulation. Cultivations were conducted twice a year for 2 years in greenhouses. The developed crop model, DeepCrop, recorded the highest modeling efficiency (= 0.76) and the lowest normalized mean squared error (= 0.18) compared to accessible crop models in the evaluation with unseen data. The t-distributed stochastic neighbor embedding distribution and the attention weights supported that DeepCrop could be analyzed in terms of cognitive ability. With the high adaptability of DeepCrop, the developed model can replace the existing crop models as a versatile tool that would reveal entangled agricultural systems with analysis of complicated information. |
format | Online Article Text |
id | pubmed-10202189 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | AAAS |
record_format | MEDLINE/PubMed |
spelling | pubmed-102021892023-05-23 Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders Moon, Taewon Kim, Dongpil Kwon, Sungmin Son, Jung Eek Plant Phenomics Research Article Crop models have been developed for wide research purposes and scales, but they have low compatibility due to the diversity of current modeling studies. Improving model adaptability can lead to model integration. Since deep neural networks have no conventional modeling parameters, diverse input and output combinations are possible depending on model training. Despite these advantages, no process-based crop model has been tested in full deep neural network complexes. The objective of this study was to develop a process-based deep learning model for hydroponic sweet peppers. Attention mechanism and multitask learning were selected to process distinct growth factors from the environment sequence. The algorithms were modified to be suitable for the regression task of growth simulation. Cultivations were conducted twice a year for 2 years in greenhouses. The developed crop model, DeepCrop, recorded the highest modeling efficiency (= 0.76) and the lowest normalized mean squared error (= 0.18) compared to accessible crop models in the evaluation with unseen data. The t-distributed stochastic neighbor embedding distribution and the attention weights supported that DeepCrop could be analyzed in terms of cognitive ability. With the high adaptability of DeepCrop, the developed model can replace the existing crop models as a versatile tool that would reveal entangled agricultural systems with analysis of complicated information. AAAS 2023-04-12 /pmc/articles/PMC10202189/ /pubmed/37223314 http://dx.doi.org/10.34133/plantphenomics.0035 Text en Copyright © 2023 Taewon Moon et al. https://creativecommons.org/licenses/by/4.0/Exclusive Licensee Nanjing Agricultural University. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY 4.0) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Moon, Taewon Kim, Dongpil Kwon, Sungmin Son, Jung Eek Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders |
title | Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders |
title_full | Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders |
title_fullStr | Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders |
title_full_unstemmed | Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders |
title_short | Process-Based Crop Modeling for High Applicability with Attention Mechanism and Multitask Decoders |
title_sort | process-based crop modeling for high applicability with attention mechanism and multitask decoders |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10202189/ https://www.ncbi.nlm.nih.gov/pubmed/37223314 http://dx.doi.org/10.34133/plantphenomics.0035 |
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