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Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology

In the current paper, we review existing tools for solving variable selection problems in psychology. Modern regularization methods such as lasso regression have recently been introduced in the field and are incorporated into popular methodologies, such as network analysis. However, several recogniz...

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Autores principales: Bainter, Sierra A., McCauley, Thomas G., Fahmy, Mahmoud M., Goodman, Zachary T., Kupis, Lauren B., Rao, J. Sunil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10202760/
https://www.ncbi.nlm.nih.gov/pubmed/37217762
http://dx.doi.org/10.1007/s11336-023-09914-9
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author Bainter, Sierra A.
McCauley, Thomas G.
Fahmy, Mahmoud M.
Goodman, Zachary T.
Kupis, Lauren B.
Rao, J. Sunil
author_facet Bainter, Sierra A.
McCauley, Thomas G.
Fahmy, Mahmoud M.
Goodman, Zachary T.
Kupis, Lauren B.
Rao, J. Sunil
author_sort Bainter, Sierra A.
collection PubMed
description In the current paper, we review existing tools for solving variable selection problems in psychology. Modern regularization methods such as lasso regression have recently been introduced in the field and are incorporated into popular methodologies, such as network analysis. However, several recognized limitations of lasso regularization may limit its suitability for psychological research. In this paper, we compare the properties of lasso approaches used for variable selection to Bayesian variable selection approaches. In particular we highlight advantages of stochastic search variable selection (SSVS), that make it well suited for variable selection applications in psychology. We demonstrate these advantages and contrast SSVS with lasso type penalization in an application to predict depression symptoms in a large sample and an accompanying simulation study. We investigate the effects of sample size, effect size, and patterns of correlation among predictors on rates of correct and false inclusion and bias in the estimates. SSVS as investigated here is reasonably computationally efficient and powerful to detect moderate effects in small sample sizes (or small effects in moderate sample sizes), while protecting against false inclusion and without over-penalizing true effects. We recommend SSVS as a flexible framework that is well-suited for the field, discuss limitations, and suggest directions for future development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11336-023-09914-9.
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spelling pubmed-102027602023-05-25 Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology Bainter, Sierra A. McCauley, Thomas G. Fahmy, Mahmoud M. Goodman, Zachary T. Kupis, Lauren B. Rao, J. Sunil Psychometrika Original Research In the current paper, we review existing tools for solving variable selection problems in psychology. Modern regularization methods such as lasso regression have recently been introduced in the field and are incorporated into popular methodologies, such as network analysis. However, several recognized limitations of lasso regularization may limit its suitability for psychological research. In this paper, we compare the properties of lasso approaches used for variable selection to Bayesian variable selection approaches. In particular we highlight advantages of stochastic search variable selection (SSVS), that make it well suited for variable selection applications in psychology. We demonstrate these advantages and contrast SSVS with lasso type penalization in an application to predict depression symptoms in a large sample and an accompanying simulation study. We investigate the effects of sample size, effect size, and patterns of correlation among predictors on rates of correct and false inclusion and bias in the estimates. SSVS as investigated here is reasonably computationally efficient and powerful to detect moderate effects in small sample sizes (or small effects in moderate sample sizes), while protecting against false inclusion and without over-penalizing true effects. We recommend SSVS as a flexible framework that is well-suited for the field, discuss limitations, and suggest directions for future development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11336-023-09914-9. Springer US 2023-05-23 2023 /pmc/articles/PMC10202760/ /pubmed/37217762 http://dx.doi.org/10.1007/s11336-023-09914-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Research
Bainter, Sierra A.
McCauley, Thomas G.
Fahmy, Mahmoud M.
Goodman, Zachary T.
Kupis, Lauren B.
Rao, J. Sunil
Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology
title Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology
title_full Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology
title_fullStr Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology
title_full_unstemmed Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology
title_short Comparing Bayesian Variable Selection to Lasso Approaches for Applications in Psychology
title_sort comparing bayesian variable selection to lasso approaches for applications in psychology
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10202760/
https://www.ncbi.nlm.nih.gov/pubmed/37217762
http://dx.doi.org/10.1007/s11336-023-09914-9
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