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Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices
Theory predicts that the additive genetic covariance ([Formula: see text] ) matrix determines a population’s short-term (in)ability to respond to directional selection—evolvability in the Hansen–Houle sense—which is typically quantified and compared via certain scalar indices called evolvability mea...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10203032/ https://www.ncbi.nlm.nih.gov/pubmed/37217733 http://dx.doi.org/10.1007/s00285-023-01930-8 |
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author | Watanabe, Junya |
author_facet | Watanabe, Junya |
author_sort | Watanabe, Junya |
collection | PubMed |
description | Theory predicts that the additive genetic covariance ([Formula: see text] ) matrix determines a population’s short-term (in)ability to respond to directional selection—evolvability in the Hansen–Houle sense—which is typically quantified and compared via certain scalar indices called evolvability measures. Often, interest is in obtaining the averages of these measures across all possible selection gradients, but explicit formulae for most of these average measures have not been known. Previous authors relied either on approximations by the delta method, whose accuracy is generally unknown, or Monte Carlo evaluations (including the random skewers analysis), which necessarily involve random fluctuations. This study presents new, exact expressions for the average conditional evolvability, average autonomy, average respondability, average flexibility, average response difference, and average response correlation, utilizing their mathematical structures as ratios of quadratic forms. The new expressions are infinite series involving top-order zonal and invariant polynomials of matrix arguments, and can be numerically evaluated as their partial sums with, for some measures, known error bounds. Whenever these partial sums numerically converge within reasonable computational time and memory, they will replace the previous approximate methods. In addition, new expressions are derived for the average measures under a general normal distribution for the selection gradient, extending the applicability of these measures into a substantially broader class of selection regimes. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-023-01930-8. |
format | Online Article Text |
id | pubmed-10203032 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-102030322023-05-24 Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices Watanabe, Junya J Math Biol Article Theory predicts that the additive genetic covariance ([Formula: see text] ) matrix determines a population’s short-term (in)ability to respond to directional selection—evolvability in the Hansen–Houle sense—which is typically quantified and compared via certain scalar indices called evolvability measures. Often, interest is in obtaining the averages of these measures across all possible selection gradients, but explicit formulae for most of these average measures have not been known. Previous authors relied either on approximations by the delta method, whose accuracy is generally unknown, or Monte Carlo evaluations (including the random skewers analysis), which necessarily involve random fluctuations. This study presents new, exact expressions for the average conditional evolvability, average autonomy, average respondability, average flexibility, average response difference, and average response correlation, utilizing their mathematical structures as ratios of quadratic forms. The new expressions are infinite series involving top-order zonal and invariant polynomials of matrix arguments, and can be numerically evaluated as their partial sums with, for some measures, known error bounds. Whenever these partial sums numerically converge within reasonable computational time and memory, they will replace the previous approximate methods. In addition, new expressions are derived for the average measures under a general normal distribution for the selection gradient, extending the applicability of these measures into a substantially broader class of selection regimes. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-023-01930-8. Springer Berlin Heidelberg 2023-05-22 2023 /pmc/articles/PMC10203032/ /pubmed/37217733 http://dx.doi.org/10.1007/s00285-023-01930-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Watanabe, Junya Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices |
title | Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices |
title_full | Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices |
title_fullStr | Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices |
title_full_unstemmed | Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices |
title_short | Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [Formula: see text] matrices |
title_sort | exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing [formula: see text] matrices |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10203032/ https://www.ncbi.nlm.nih.gov/pubmed/37217733 http://dx.doi.org/10.1007/s00285-023-01930-8 |
work_keys_str_mv | AT watanabejunya exactexpressionsandnumericalevaluationofaverageevolvabilitymeasuresforcharacterizingandcomparingformulaseetextmatrices |