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Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure

PM(2.5) induces a series of effects on neurological disorders, including autism spectrum disorder (ASD), however, the mechanism is not completely clear yet. Circular RNAs (circRNAs) are a class of closed-loop structures that can be stably expressed in vivo. In our experiments, rats exposed to PM(2.5...

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Autores principales: Xie, Xiaoqian, Li, Kang, Liang, Xiaotian, Tian, Lei, Lin, Bencheng, Yan, Jun, Shi, Yue, Liu, Xiaohua, Xi, Zhuge
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10203163/
https://www.ncbi.nlm.nih.gov/pubmed/37229188
http://dx.doi.org/10.3389/fgene.2023.970465
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author Xie, Xiaoqian
Li, Kang
Liang, Xiaotian
Tian, Lei
Lin, Bencheng
Yan, Jun
Shi, Yue
Liu, Xiaohua
Xi, Zhuge
author_facet Xie, Xiaoqian
Li, Kang
Liang, Xiaotian
Tian, Lei
Lin, Bencheng
Yan, Jun
Shi, Yue
Liu, Xiaohua
Xi, Zhuge
author_sort Xie, Xiaoqian
collection PubMed
description PM(2.5) induces a series of effects on neurological disorders, including autism spectrum disorder (ASD), however, the mechanism is not completely clear yet. Circular RNAs (circRNAs) are a class of closed-loop structures that can be stably expressed in vivo. In our experiments, rats exposed to PM(2.5) exhibited autism-like phenotypes, such as anxiety, and memory loss. To explore the etiology, we performed transcriptome sequencing and found significant differences in the expression of circRNA. A total of 7770 circRNAs were identified between the control and experimental groups, 18 of which were differentially expressed, we selected ten circRNAs and performed qRT-PCR and Sanger sequencing to validate them. By GO and KEGG enrichment analysis, we found differentially expressed circRNAs that were mainly enriched in processes related to placental development and reproduction. Finally, using bioinformatics, we predicted miRNAs and mRNAs that circ-Mbd5 and circ-Ash1l might regulate and constructed circRNA-miRNA-mRNA networks involving genes associated with ASD, suggesting that circRNAs might regulate the occurrence of ASD.
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spelling pubmed-102031632023-05-24 Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure Xie, Xiaoqian Li, Kang Liang, Xiaotian Tian, Lei Lin, Bencheng Yan, Jun Shi, Yue Liu, Xiaohua Xi, Zhuge Front Genet Genetics PM(2.5) induces a series of effects on neurological disorders, including autism spectrum disorder (ASD), however, the mechanism is not completely clear yet. Circular RNAs (circRNAs) are a class of closed-loop structures that can be stably expressed in vivo. In our experiments, rats exposed to PM(2.5) exhibited autism-like phenotypes, such as anxiety, and memory loss. To explore the etiology, we performed transcriptome sequencing and found significant differences in the expression of circRNA. A total of 7770 circRNAs were identified between the control and experimental groups, 18 of which were differentially expressed, we selected ten circRNAs and performed qRT-PCR and Sanger sequencing to validate them. By GO and KEGG enrichment analysis, we found differentially expressed circRNAs that were mainly enriched in processes related to placental development and reproduction. Finally, using bioinformatics, we predicted miRNAs and mRNAs that circ-Mbd5 and circ-Ash1l might regulate and constructed circRNA-miRNA-mRNA networks involving genes associated with ASD, suggesting that circRNAs might regulate the occurrence of ASD. Frontiers Media S.A. 2023-05-09 /pmc/articles/PMC10203163/ /pubmed/37229188 http://dx.doi.org/10.3389/fgene.2023.970465 Text en Copyright © 2023 Xie, Li, Liang, Tian, Lin, Yan, Shi, Liu and Xi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Xie, Xiaoqian
Li, Kang
Liang, Xiaotian
Tian, Lei
Lin, Bencheng
Yan, Jun
Shi, Yue
Liu, Xiaohua
Xi, Zhuge
Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure
title Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure
title_full Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure
title_fullStr Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure
title_full_unstemmed Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure
title_short Identification and characterization of circular RNA in the model of autism spectrum disorder from PM(2.5) exposure
title_sort identification and characterization of circular rna in the model of autism spectrum disorder from pm(2.5) exposure
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10203163/
https://www.ncbi.nlm.nih.gov/pubmed/37229188
http://dx.doi.org/10.3389/fgene.2023.970465
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