Cargando…
Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study
BACKGROUND: Norovirus is associated with approximately 18% of the global burden of gastroenteritis and affects all age groups. There is currently no licensed vaccine or available antiviral treatment. However, well-designed early warning systems and forecasting can guide nonpharmaceutical approaches...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
JMIR Publications
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10203923/ https://www.ncbi.nlm.nih.gov/pubmed/37155231 http://dx.doi.org/10.2196/37540 |
_version_ | 1785045734387613696 |
---|---|
author | Ondrikova, Nikola Harris, John P Douglas, Amy Hughes, Helen E Iturriza-Gomara, Miren Vivancos, Roberto Elliot, Alex J Cunliffe, Nigel A Clough, Helen E |
author_facet | Ondrikova, Nikola Harris, John P Douglas, Amy Hughes, Helen E Iturriza-Gomara, Miren Vivancos, Roberto Elliot, Alex J Cunliffe, Nigel A Clough, Helen E |
author_sort | Ondrikova, Nikola |
collection | PubMed |
description | BACKGROUND: Norovirus is associated with approximately 18% of the global burden of gastroenteritis and affects all age groups. There is currently no licensed vaccine or available antiviral treatment. However, well-designed early warning systems and forecasting can guide nonpharmaceutical approaches to norovirus infection prevention and control. OBJECTIVE: This study evaluates the predictive power of existing syndromic surveillance data and emerging data sources, such as internet searches and Wikipedia page views, to predict norovirus activity across a range of age groups across England. METHODS: We used existing syndromic surveillance and emerging syndromic data to predict laboratory data indicating norovirus activity. Two methods are used to evaluate the predictive potential of syndromic variables. First, the Granger causality framework was used to assess whether individual variables precede changes in norovirus laboratory reports in a given region or an age group. Then, we used random forest modeling to estimate the importance of each variable in the context of others with two methods: (1) change in the mean square error and (2) node purity. Finally, these results were combined into a visualization indicating the most influential predictors for norovirus laboratory reports in a specific age group and region. RESULTS: Our results suggest that syndromic surveillance data include valuable predictors for norovirus laboratory reports in England. However, Wikipedia page views are less likely to provide prediction improvements on top of Google Trends and Existing Syndromic Data. Predictors displayed varying relevance across age groups and regions. For example, the random forest modeling based on selected existing and emerging syndromic variables explained 60% variance in the ≥65 years age group, 42% in the East of England, but only 13% in the South West region. Emerging data sets highlighted relative search volumes, including “flu symptoms,” “norovirus in pregnancy,” and norovirus activity in specific years, such as “norovirus 2016.” Symptoms of vomiting and gastroenteritis in multiple age groups were identified as important predictors within existing data sources. CONCLUSIONS: Existing and emerging data sources can help predict norovirus activity in England in some age groups and geographic regions, particularly, predictors concerning vomiting, gastroenteritis, and norovirus in the vulnerable populations and historical terms such as stomach flu. However, syndromic predictors were less relevant in some age groups and regions likely due to contrasting public health practices between regions and health information–seeking behavior between age groups. Additionally, predictors relevant to one norovirus season may not contribute to other seasons. Data biases, such as low spatial granularity in Google Trends and especially in Wikipedia data, also play a role in the results. Moreover, internet searches can provide insight into mental models, that is, an individual’s conceptual understanding of norovirus infection and transmission, which could be used in public health communication strategies. |
format | Online Article Text |
id | pubmed-10203923 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | JMIR Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-102039232023-05-24 Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study Ondrikova, Nikola Harris, John P Douglas, Amy Hughes, Helen E Iturriza-Gomara, Miren Vivancos, Roberto Elliot, Alex J Cunliffe, Nigel A Clough, Helen E J Med Internet Res Original Paper BACKGROUND: Norovirus is associated with approximately 18% of the global burden of gastroenteritis and affects all age groups. There is currently no licensed vaccine or available antiviral treatment. However, well-designed early warning systems and forecasting can guide nonpharmaceutical approaches to norovirus infection prevention and control. OBJECTIVE: This study evaluates the predictive power of existing syndromic surveillance data and emerging data sources, such as internet searches and Wikipedia page views, to predict norovirus activity across a range of age groups across England. METHODS: We used existing syndromic surveillance and emerging syndromic data to predict laboratory data indicating norovirus activity. Two methods are used to evaluate the predictive potential of syndromic variables. First, the Granger causality framework was used to assess whether individual variables precede changes in norovirus laboratory reports in a given region or an age group. Then, we used random forest modeling to estimate the importance of each variable in the context of others with two methods: (1) change in the mean square error and (2) node purity. Finally, these results were combined into a visualization indicating the most influential predictors for norovirus laboratory reports in a specific age group and region. RESULTS: Our results suggest that syndromic surveillance data include valuable predictors for norovirus laboratory reports in England. However, Wikipedia page views are less likely to provide prediction improvements on top of Google Trends and Existing Syndromic Data. Predictors displayed varying relevance across age groups and regions. For example, the random forest modeling based on selected existing and emerging syndromic variables explained 60% variance in the ≥65 years age group, 42% in the East of England, but only 13% in the South West region. Emerging data sets highlighted relative search volumes, including “flu symptoms,” “norovirus in pregnancy,” and norovirus activity in specific years, such as “norovirus 2016.” Symptoms of vomiting and gastroenteritis in multiple age groups were identified as important predictors within existing data sources. CONCLUSIONS: Existing and emerging data sources can help predict norovirus activity in England in some age groups and geographic regions, particularly, predictors concerning vomiting, gastroenteritis, and norovirus in the vulnerable populations and historical terms such as stomach flu. However, syndromic predictors were less relevant in some age groups and regions likely due to contrasting public health practices between regions and health information–seeking behavior between age groups. Additionally, predictors relevant to one norovirus season may not contribute to other seasons. Data biases, such as low spatial granularity in Google Trends and especially in Wikipedia data, also play a role in the results. Moreover, internet searches can provide insight into mental models, that is, an individual’s conceptual understanding of norovirus infection and transmission, which could be used in public health communication strategies. JMIR Publications 2023-05-08 /pmc/articles/PMC10203923/ /pubmed/37155231 http://dx.doi.org/10.2196/37540 Text en ©Nikola Ondrikova, John P Harris, Amy Douglas, Helen E Hughes, Miren Iturriza-Gomara, Roberto Vivancos, Alex J Elliot, Nigel A Cunliffe, Helen E Clough. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 08.05.2023. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on https://www.jmir.org/, as well as this copyright and license information must be included. |
spellingShingle | Original Paper Ondrikova, Nikola Harris, John P Douglas, Amy Hughes, Helen E Iturriza-Gomara, Miren Vivancos, Roberto Elliot, Alex J Cunliffe, Nigel A Clough, Helen E Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study |
title | Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study |
title_full | Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study |
title_fullStr | Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study |
title_full_unstemmed | Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study |
title_short | Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study |
title_sort | predicting norovirus in england using existing and emerging syndromic data: infodemiology study |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10203923/ https://www.ncbi.nlm.nih.gov/pubmed/37155231 http://dx.doi.org/10.2196/37540 |
work_keys_str_mv | AT ondrikovanikola predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT harrisjohnp predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT douglasamy predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT hugheshelene predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT iturrizagomaramiren predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT vivancosroberto predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT elliotalexj predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT cunliffenigela predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy AT cloughhelene predictingnorovirusinenglandusingexistingandemergingsyndromicdatainfodemiologystudy |