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A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background

It is valuable to develop a generic model that can accurately estimate the leaf area index (LAI) of wheat from unmanned aerial vehicle-based multispectral data for diverse soil backgrounds without any ground calibration. To achieve this objective, 2 strategies were investigated to improve our existi...

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Autores principales: Chen, Qiaomin, Zheng, Bangyou, Chenu, Karine, Chapman, Scott C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AAAS 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10205590/
https://www.ncbi.nlm.nih.gov/pubmed/37234427
http://dx.doi.org/10.34133/plantphenomics.0055
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author Chen, Qiaomin
Zheng, Bangyou
Chenu, Karine
Chapman, Scott C.
author_facet Chen, Qiaomin
Zheng, Bangyou
Chenu, Karine
Chapman, Scott C.
author_sort Chen, Qiaomin
collection PubMed
description It is valuable to develop a generic model that can accurately estimate the leaf area index (LAI) of wheat from unmanned aerial vehicle-based multispectral data for diverse soil backgrounds without any ground calibration. To achieve this objective, 2 strategies were investigated to improve our existing random forest regression (RFR) model, which was trained with simulations from a radiative transfer model (PROSAIL). The 2 strategies consisted of (a) broadening the reflectance domain of soil background to generate training data and (b) finding an appropriate set of indicators (band reflectance and/or vegetation indices) as inputs of the RFR model. The RFR models were tested in diverse soils representing varying soil types in Australia. Simulation analysis indicated that adopting both strategies resulted in a generic model that can provide accurate estimation for wheat LAI and is resistant to changes in soil background. From validation on 2 years of field trials, this model achieved high prediction accuracy for LAI over the entire crop cycle (LAI up to 7 m(2) m(−2)) (root mean square error (RMSE): 0.23 to 0.89 m(2) m(−2)), including for sparse canopy (LAI less than 0.3 m(2) m(−2)) grown on different soil types (RMSE: 0.02 to 0.25 m(2) m(−2)). The model reliably captured the seasonal pattern of LAI dynamics for different treatments in terms of genotypes, plant densities, and water–nitrogen managements (correlation coefficient: 0.82 to 0.98). With appropriate adaptations, this framework can be adjusted to any type of sensors to estimate various traits for various species (including but not limited to LAI of wheat) in associated disciplines, e.g., crop breeding, precision agriculture, etc.
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spelling pubmed-102055902023-05-25 A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background Chen, Qiaomin Zheng, Bangyou Chenu, Karine Chapman, Scott C. Plant Phenomics Research Article It is valuable to develop a generic model that can accurately estimate the leaf area index (LAI) of wheat from unmanned aerial vehicle-based multispectral data for diverse soil backgrounds without any ground calibration. To achieve this objective, 2 strategies were investigated to improve our existing random forest regression (RFR) model, which was trained with simulations from a radiative transfer model (PROSAIL). The 2 strategies consisted of (a) broadening the reflectance domain of soil background to generate training data and (b) finding an appropriate set of indicators (band reflectance and/or vegetation indices) as inputs of the RFR model. The RFR models were tested in diverse soils representing varying soil types in Australia. Simulation analysis indicated that adopting both strategies resulted in a generic model that can provide accurate estimation for wheat LAI and is resistant to changes in soil background. From validation on 2 years of field trials, this model achieved high prediction accuracy for LAI over the entire crop cycle (LAI up to 7 m(2) m(−2)) (root mean square error (RMSE): 0.23 to 0.89 m(2) m(−2)), including for sparse canopy (LAI less than 0.3 m(2) m(−2)) grown on different soil types (RMSE: 0.02 to 0.25 m(2) m(−2)). The model reliably captured the seasonal pattern of LAI dynamics for different treatments in terms of genotypes, plant densities, and water–nitrogen managements (correlation coefficient: 0.82 to 0.98). With appropriate adaptations, this framework can be adjusted to any type of sensors to estimate various traits for various species (including but not limited to LAI of wheat) in associated disciplines, e.g., crop breeding, precision agriculture, etc. AAAS 2023-05-23 /pmc/articles/PMC10205590/ /pubmed/37234427 http://dx.doi.org/10.34133/plantphenomics.0055 Text en Copyright © 2023 Qiaomin Chen et al. https://creativecommons.org/licenses/by/4.0/Exclusive licensee Nanjing Agricultural University. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License (CC BY 4.0) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Article
Chen, Qiaomin
Zheng, Bangyou
Chenu, Karine
Chapman, Scott C.
A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background
title A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background
title_full A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background
title_fullStr A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background
title_full_unstemmed A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background
title_short A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background
title_sort generic model to estimate wheat lai over growing season regardless of the soil-type background
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10205590/
https://www.ncbi.nlm.nih.gov/pubmed/37234427
http://dx.doi.org/10.34133/plantphenomics.0055
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