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Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor
BACKGROUND: Accurate preoperative assessment of surgical difficulty is crucial to the success of the surgery and patient safety. This study aimed to evaluate the difficulty for endoscopic resection (ER) of gastric gastrointestinal stromal tumors (gGISTs) using multiple machine learning (ML) algorith...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10206233/ https://www.ncbi.nlm.nih.gov/pubmed/37234977 http://dx.doi.org/10.3389/fonc.2023.1190987 |
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author | Liu, Luojie Zhang, Rufa Shi, Dongtao Li, Rui Wang, Qinghua Feng, Yunfu Lu, Fenying Zong, Yang Xu, Xiaodan |
author_facet | Liu, Luojie Zhang, Rufa Shi, Dongtao Li, Rui Wang, Qinghua Feng, Yunfu Lu, Fenying Zong, Yang Xu, Xiaodan |
author_sort | Liu, Luojie |
collection | PubMed |
description | BACKGROUND: Accurate preoperative assessment of surgical difficulty is crucial to the success of the surgery and patient safety. This study aimed to evaluate the difficulty for endoscopic resection (ER) of gastric gastrointestinal stromal tumors (gGISTs) using multiple machine learning (ML) algorithms. METHODS: From December 2010 to December 2022, 555 patients with gGISTs in multi-centers were retrospectively studied and assigned to a training, validation, and test cohort. A difficult case was defined as meeting one of the following criteria: an operative time ≥ 90 min, severe intraoperative bleeding, or conversion to laparoscopic resection. Five types of algorithms were employed in building models, including traditional logistic regression (LR) and automated machine learning (AutoML) analysis (gradient boost machine (GBM), deep neural net (DL), generalized linear model (GLM), and default random forest (DRF)). We assessed the performance of the models using the areas under the receiver operating characteristic curves (AUC), the calibration curve, and the decision curve analysis (DCA) based on LR, as well as feature importance, SHapley Additive exPlanation (SHAP) Plots and Local Interpretable Model Agnostic Explanation (LIME) based on AutoML. RESULTS: The GBM model outperformed other models with an AUC of 0.894 in the validation and 0.791 in the test cohorts. Furthermore, the GBM model achieved the highest accuracy among these AutoML models, with 0.935 and 0.911 in the validation and test cohorts, respectively. In addition, it was found that tumor size and endoscopists’ experience were the most prominent features that significantly impacted the AutoML model’s performance in predicting the difficulty for ER of gGISTs. CONCLUSION: The AutoML model based on the GBM algorithm can accurately predict the difficulty for ER of gGISTs before surgery. |
format | Online Article Text |
id | pubmed-10206233 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102062332023-05-25 Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor Liu, Luojie Zhang, Rufa Shi, Dongtao Li, Rui Wang, Qinghua Feng, Yunfu Lu, Fenying Zong, Yang Xu, Xiaodan Front Oncol Oncology BACKGROUND: Accurate preoperative assessment of surgical difficulty is crucial to the success of the surgery and patient safety. This study aimed to evaluate the difficulty for endoscopic resection (ER) of gastric gastrointestinal stromal tumors (gGISTs) using multiple machine learning (ML) algorithms. METHODS: From December 2010 to December 2022, 555 patients with gGISTs in multi-centers were retrospectively studied and assigned to a training, validation, and test cohort. A difficult case was defined as meeting one of the following criteria: an operative time ≥ 90 min, severe intraoperative bleeding, or conversion to laparoscopic resection. Five types of algorithms were employed in building models, including traditional logistic regression (LR) and automated machine learning (AutoML) analysis (gradient boost machine (GBM), deep neural net (DL), generalized linear model (GLM), and default random forest (DRF)). We assessed the performance of the models using the areas under the receiver operating characteristic curves (AUC), the calibration curve, and the decision curve analysis (DCA) based on LR, as well as feature importance, SHapley Additive exPlanation (SHAP) Plots and Local Interpretable Model Agnostic Explanation (LIME) based on AutoML. RESULTS: The GBM model outperformed other models with an AUC of 0.894 in the validation and 0.791 in the test cohorts. Furthermore, the GBM model achieved the highest accuracy among these AutoML models, with 0.935 and 0.911 in the validation and test cohorts, respectively. In addition, it was found that tumor size and endoscopists’ experience were the most prominent features that significantly impacted the AutoML model’s performance in predicting the difficulty for ER of gGISTs. CONCLUSION: The AutoML model based on the GBM algorithm can accurately predict the difficulty for ER of gGISTs before surgery. Frontiers Media S.A. 2023-05-10 /pmc/articles/PMC10206233/ /pubmed/37234977 http://dx.doi.org/10.3389/fonc.2023.1190987 Text en Copyright © 2023 Liu, Zhang, Shi, Li, Wang, Feng, Lu, Zong and Xu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Liu, Luojie Zhang, Rufa Shi, Dongtao Li, Rui Wang, Qinghua Feng, Yunfu Lu, Fenying Zong, Yang Xu, Xiaodan Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor |
title | Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor |
title_full | Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor |
title_fullStr | Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor |
title_full_unstemmed | Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor |
title_short | Automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor |
title_sort | automated machine learning to predict the difficulty for endoscopic resection of gastric gastrointestinal stromal tumor |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10206233/ https://www.ncbi.nlm.nih.gov/pubmed/37234977 http://dx.doi.org/10.3389/fonc.2023.1190987 |
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