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Epistasis and evolution: recent advances and an outlook for prediction

As organisms evolve, the effects of mutations change as a result of epistatic interactions with other mutations accumulated along the line of descent. This can lead to shifts in adaptability or robustness that ultimately shape subsequent evolution. Here, we review recent advances in measuring, model...

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Detalles Bibliográficos
Autores principales: Johnson, Milo S., Reddy, Gautam, Desai, Michael M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10206586/
https://www.ncbi.nlm.nih.gov/pubmed/37226182
http://dx.doi.org/10.1186/s12915-023-01585-3
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author Johnson, Milo S.
Reddy, Gautam
Desai, Michael M.
author_facet Johnson, Milo S.
Reddy, Gautam
Desai, Michael M.
author_sort Johnson, Milo S.
collection PubMed
description As organisms evolve, the effects of mutations change as a result of epistatic interactions with other mutations accumulated along the line of descent. This can lead to shifts in adaptability or robustness that ultimately shape subsequent evolution. Here, we review recent advances in measuring, modeling, and predicting epistasis along evolutionary trajectories, both in microbial cells and single proteins. We focus on simple patterns of global epistasis that emerge in this data, in which the effects of mutations can be predicted by a small number of variables. The emergence of these patterns offers promise for efforts to model epistasis and predict evolution.
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spelling pubmed-102065862023-05-25 Epistasis and evolution: recent advances and an outlook for prediction Johnson, Milo S. Reddy, Gautam Desai, Michael M. BMC Biol Review As organisms evolve, the effects of mutations change as a result of epistatic interactions with other mutations accumulated along the line of descent. This can lead to shifts in adaptability or robustness that ultimately shape subsequent evolution. Here, we review recent advances in measuring, modeling, and predicting epistasis along evolutionary trajectories, both in microbial cells and single proteins. We focus on simple patterns of global epistasis that emerge in this data, in which the effects of mutations can be predicted by a small number of variables. The emergence of these patterns offers promise for efforts to model epistasis and predict evolution. BioMed Central 2023-05-24 /pmc/articles/PMC10206586/ /pubmed/37226182 http://dx.doi.org/10.1186/s12915-023-01585-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Johnson, Milo S.
Reddy, Gautam
Desai, Michael M.
Epistasis and evolution: recent advances and an outlook for prediction
title Epistasis and evolution: recent advances and an outlook for prediction
title_full Epistasis and evolution: recent advances and an outlook for prediction
title_fullStr Epistasis and evolution: recent advances and an outlook for prediction
title_full_unstemmed Epistasis and evolution: recent advances and an outlook for prediction
title_short Epistasis and evolution: recent advances and an outlook for prediction
title_sort epistasis and evolution: recent advances and an outlook for prediction
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10206586/
https://www.ncbi.nlm.nih.gov/pubmed/37226182
http://dx.doi.org/10.1186/s12915-023-01585-3
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