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ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation

In recent years, more attention paid to the spine caused by related diseases, spinal parsing (the multi-class segmentation of vertebrae and intervertebral disc) is an important part of the diagnosis and treatment of various spinal diseases. The more accurate the segmentation of medical images, the m...

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Autores principales: Li, Lei, Qin, Juan, Lv, Lianrong, Cheng, Mengdan, Wang, Biao, Xia, Dan, Wang, Shike
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10208197/
https://www.ncbi.nlm.nih.gov/pubmed/37360883
http://dx.doi.org/10.1007/s13042-023-01857-y
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author Li, Lei
Qin, Juan
Lv, Lianrong
Cheng, Mengdan
Wang, Biao
Xia, Dan
Wang, Shike
author_facet Li, Lei
Qin, Juan
Lv, Lianrong
Cheng, Mengdan
Wang, Biao
Xia, Dan
Wang, Shike
author_sort Li, Lei
collection PubMed
description In recent years, more attention paid to the spine caused by related diseases, spinal parsing (the multi-class segmentation of vertebrae and intervertebral disc) is an important part of the diagnosis and treatment of various spinal diseases. The more accurate the segmentation of medical images, the more convenient and quick the clinicians can evaluate and diagnose spinal diseases. Traditional medical image segmentation is often time consuming and energy consuming. In this paper, an efficient and novel automatic segmentation network model for MR spine images is designed. The proposed Inception-CBAM Unet++ (ICUnet++) model replaces the initial module with the Inception structure in the encoder-decoder stage base on Unet++ , which uses the parallel connection of multiple convolution kernels to obtain the features of different receptive fields during in the feature extraction. According to the characteristics of the attention mechanism, Attention Gate module and CBAM module are used in the network to make the attention coefficient highlight the characteristics of the local area. To evaluate the segmentation performance of network model, four evaluation metrics, namely intersection over union (IoU), dice similarity coefficient(DSC), true positive rate(TPR), positive predictive value(PPV) are used in the study. The published SpineSagT2Wdataset3 spinal MRI dataset is used during the experiments. In the experiment results, IoU reaches 83.16%, DSC is 90.32%, TPR is 90.40%, and PPV is 90.52%. It can be seen that the segmentation indicators have been significantly improved, which reflects the effectiveness of the model.
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spelling pubmed-102081972023-05-25 ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation Li, Lei Qin, Juan Lv, Lianrong Cheng, Mengdan Wang, Biao Xia, Dan Wang, Shike Int J Mach Learn Cybern Original Article In recent years, more attention paid to the spine caused by related diseases, spinal parsing (the multi-class segmentation of vertebrae and intervertebral disc) is an important part of the diagnosis and treatment of various spinal diseases. The more accurate the segmentation of medical images, the more convenient and quick the clinicians can evaluate and diagnose spinal diseases. Traditional medical image segmentation is often time consuming and energy consuming. In this paper, an efficient and novel automatic segmentation network model for MR spine images is designed. The proposed Inception-CBAM Unet++ (ICUnet++) model replaces the initial module with the Inception structure in the encoder-decoder stage base on Unet++ , which uses the parallel connection of multiple convolution kernels to obtain the features of different receptive fields during in the feature extraction. According to the characteristics of the attention mechanism, Attention Gate module and CBAM module are used in the network to make the attention coefficient highlight the characteristics of the local area. To evaluate the segmentation performance of network model, four evaluation metrics, namely intersection over union (IoU), dice similarity coefficient(DSC), true positive rate(TPR), positive predictive value(PPV) are used in the study. The published SpineSagT2Wdataset3 spinal MRI dataset is used during the experiments. In the experiment results, IoU reaches 83.16%, DSC is 90.32%, TPR is 90.40%, and PPV is 90.52%. It can be seen that the segmentation indicators have been significantly improved, which reflects the effectiveness of the model. Springer Berlin Heidelberg 2023-05-24 /pmc/articles/PMC10208197/ /pubmed/37360883 http://dx.doi.org/10.1007/s13042-023-01857-y Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Li, Lei
Qin, Juan
Lv, Lianrong
Cheng, Mengdan
Wang, Biao
Xia, Dan
Wang, Shike
ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation
title ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation
title_full ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation
title_fullStr ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation
title_full_unstemmed ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation
title_short ICUnet++: an Inception-CBAM network based on Unet++ for MR spine image segmentation
title_sort icunet++: an inception-cbam network based on unet++ for mr spine image segmentation
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10208197/
https://www.ncbi.nlm.nih.gov/pubmed/37360883
http://dx.doi.org/10.1007/s13042-023-01857-y
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