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Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries
Preterm birth (PTB) is the leading cause of death in children under five, yet comprehensive studies are hindered by its multiple complex etiologies. Epidemiological associations between PTB and maternal characteristics have been previously described. This work used multiomic profiling and multivaria...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for the Advancement of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10208584/ https://www.ncbi.nlm.nih.gov/pubmed/37224249 http://dx.doi.org/10.1126/sciadv.ade7692 |
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author | Espinosa, Camilo A. Khan, Waqasuddin Khanam, Rasheda Das, Sayan Khalid, Javairia Pervin, Jesmin Kasaro, Margaret P. Contrepois, Kévin Chang, Alan L. Phongpreecha, Thanaphong Michael, Basil Ellenberger, Mathew Mehmood, Usma Hotwani, Aneeta Nizar, Ambreen Kabir, Furqan Wong, Ronald J. Becker, Martin Berson, Eloise Culos, Anthony De Francesco, Davide Mataraso, Samson Ravindra, Neal Thuraiappah, Melan Xenochristou, Maria Stelzer, Ina A. Marić, Ivana Dutta, Arup Raqib, Rubhana Ahmed, Salahuddin Rahman, Sayedur Hasan, A. S. M. Tarik Ali, Said M. Juma, Mohamed H. Rahman, Monjur Aktar, Shaki Deb, Saikat Price, Joan T. Wise, Paul H. Winn, Virginia D. Druzin, Maurice L. Gibbs, Ronald S. Darmstadt, Gary L. Murray, Jeffrey C. Stringer, Jeffrey S. A. Gaudilliere, Brice Snyder, Michael P. Angst, Martin S. Rahman, Anisur Baqui, Abdullah H. Jehan, Fyezah Nisar, Muhammad Imran Vwalika, Bellington Sazawal, Sunil Shaw, Gary M. Stevenson, David K. Aghaeepour, Nima |
author_facet | Espinosa, Camilo A. Khan, Waqasuddin Khanam, Rasheda Das, Sayan Khalid, Javairia Pervin, Jesmin Kasaro, Margaret P. Contrepois, Kévin Chang, Alan L. Phongpreecha, Thanaphong Michael, Basil Ellenberger, Mathew Mehmood, Usma Hotwani, Aneeta Nizar, Ambreen Kabir, Furqan Wong, Ronald J. Becker, Martin Berson, Eloise Culos, Anthony De Francesco, Davide Mataraso, Samson Ravindra, Neal Thuraiappah, Melan Xenochristou, Maria Stelzer, Ina A. Marić, Ivana Dutta, Arup Raqib, Rubhana Ahmed, Salahuddin Rahman, Sayedur Hasan, A. S. M. Tarik Ali, Said M. Juma, Mohamed H. Rahman, Monjur Aktar, Shaki Deb, Saikat Price, Joan T. Wise, Paul H. Winn, Virginia D. Druzin, Maurice L. Gibbs, Ronald S. Darmstadt, Gary L. Murray, Jeffrey C. Stringer, Jeffrey S. A. Gaudilliere, Brice Snyder, Michael P. Angst, Martin S. Rahman, Anisur Baqui, Abdullah H. Jehan, Fyezah Nisar, Muhammad Imran Vwalika, Bellington Sazawal, Sunil Shaw, Gary M. Stevenson, David K. Aghaeepour, Nima |
author_sort | Espinosa, Camilo A. |
collection | PubMed |
description | Preterm birth (PTB) is the leading cause of death in children under five, yet comprehensive studies are hindered by its multiple complex etiologies. Epidemiological associations between PTB and maternal characteristics have been previously described. This work used multiomic profiling and multivariate modeling to investigate the biological signatures of these characteristics. Maternal covariates were collected during pregnancy from 13,841 pregnant women across five sites. Plasma samples from 231 participants were analyzed to generate proteomic, metabolomic, and lipidomic datasets. Machine learning models showed robust performance for the prediction of PTB (AUROC = 0.70), time-to-delivery (r = 0.65), maternal age (r = 0.59), gravidity (r = 0.56), and BMI (r = 0.81). Time-to-delivery biological correlates included fetal-associated proteins (e.g., ALPP, AFP, and PGF) and immune proteins (e.g., PD-L1, CCL28, and LIFR). Maternal age negatively correlated with collagen COL9A1, gravidity with endothelial NOS and inflammatory chemokine CXCL13, and BMI with leptin and structural protein FABP4. These results provide an integrated view of epidemiological factors associated with PTB and identify biological signatures of clinical covariates affecting this disease. |
format | Online Article Text |
id | pubmed-10208584 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-102085842023-05-26 Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries Espinosa, Camilo A. Khan, Waqasuddin Khanam, Rasheda Das, Sayan Khalid, Javairia Pervin, Jesmin Kasaro, Margaret P. Contrepois, Kévin Chang, Alan L. Phongpreecha, Thanaphong Michael, Basil Ellenberger, Mathew Mehmood, Usma Hotwani, Aneeta Nizar, Ambreen Kabir, Furqan Wong, Ronald J. Becker, Martin Berson, Eloise Culos, Anthony De Francesco, Davide Mataraso, Samson Ravindra, Neal Thuraiappah, Melan Xenochristou, Maria Stelzer, Ina A. Marić, Ivana Dutta, Arup Raqib, Rubhana Ahmed, Salahuddin Rahman, Sayedur Hasan, A. S. M. Tarik Ali, Said M. Juma, Mohamed H. Rahman, Monjur Aktar, Shaki Deb, Saikat Price, Joan T. Wise, Paul H. Winn, Virginia D. Druzin, Maurice L. Gibbs, Ronald S. Darmstadt, Gary L. Murray, Jeffrey C. Stringer, Jeffrey S. A. Gaudilliere, Brice Snyder, Michael P. Angst, Martin S. Rahman, Anisur Baqui, Abdullah H. Jehan, Fyezah Nisar, Muhammad Imran Vwalika, Bellington Sazawal, Sunil Shaw, Gary M. Stevenson, David K. Aghaeepour, Nima Sci Adv Social and Interdisciplinary Sciences Preterm birth (PTB) is the leading cause of death in children under five, yet comprehensive studies are hindered by its multiple complex etiologies. Epidemiological associations between PTB and maternal characteristics have been previously described. This work used multiomic profiling and multivariate modeling to investigate the biological signatures of these characteristics. Maternal covariates were collected during pregnancy from 13,841 pregnant women across five sites. Plasma samples from 231 participants were analyzed to generate proteomic, metabolomic, and lipidomic datasets. Machine learning models showed robust performance for the prediction of PTB (AUROC = 0.70), time-to-delivery (r = 0.65), maternal age (r = 0.59), gravidity (r = 0.56), and BMI (r = 0.81). Time-to-delivery biological correlates included fetal-associated proteins (e.g., ALPP, AFP, and PGF) and immune proteins (e.g., PD-L1, CCL28, and LIFR). Maternal age negatively correlated with collagen COL9A1, gravidity with endothelial NOS and inflammatory chemokine CXCL13, and BMI with leptin and structural protein FABP4. These results provide an integrated view of epidemiological factors associated with PTB and identify biological signatures of clinical covariates affecting this disease. American Association for the Advancement of Science 2023-05-26 /pmc/articles/PMC10208584/ /pubmed/37224249 http://dx.doi.org/10.1126/sciadv.ade7692 Text en Copyright © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Social and Interdisciplinary Sciences Espinosa, Camilo A. Khan, Waqasuddin Khanam, Rasheda Das, Sayan Khalid, Javairia Pervin, Jesmin Kasaro, Margaret P. Contrepois, Kévin Chang, Alan L. Phongpreecha, Thanaphong Michael, Basil Ellenberger, Mathew Mehmood, Usma Hotwani, Aneeta Nizar, Ambreen Kabir, Furqan Wong, Ronald J. Becker, Martin Berson, Eloise Culos, Anthony De Francesco, Davide Mataraso, Samson Ravindra, Neal Thuraiappah, Melan Xenochristou, Maria Stelzer, Ina A. Marić, Ivana Dutta, Arup Raqib, Rubhana Ahmed, Salahuddin Rahman, Sayedur Hasan, A. S. M. Tarik Ali, Said M. Juma, Mohamed H. Rahman, Monjur Aktar, Shaki Deb, Saikat Price, Joan T. Wise, Paul H. Winn, Virginia D. Druzin, Maurice L. Gibbs, Ronald S. Darmstadt, Gary L. Murray, Jeffrey C. Stringer, Jeffrey S. A. Gaudilliere, Brice Snyder, Michael P. Angst, Martin S. Rahman, Anisur Baqui, Abdullah H. Jehan, Fyezah Nisar, Muhammad Imran Vwalika, Bellington Sazawal, Sunil Shaw, Gary M. Stevenson, David K. Aghaeepour, Nima Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries |
title | Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries |
title_full | Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries |
title_fullStr | Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries |
title_full_unstemmed | Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries |
title_short | Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries |
title_sort | multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries |
topic | Social and Interdisciplinary Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10208584/ https://www.ncbi.nlm.nih.gov/pubmed/37224249 http://dx.doi.org/10.1126/sciadv.ade7692 |
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