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Convolutional neural networks in the qualitative improvement of sweet potato roots

The objective was to verify whether convolutional neural networks can help sweet potato phenotyping for qualitative traits. We evaluated 16 families of sweet potato half-sibs in a randomized block design with four replications. We obtained the images at the plant level and used the ExpImage package...

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Autores principales: Clara Gonçalves Fernandes, Ana, Ribeiro Valadares, Nermy, Henrique Oliveira Rodrigues, Clóvis, Aguiar Alves, Rayane, Lorena Melucio Guedes, Lis, Luiz Mendes Athayde, André, Mistico Azevedo, Alcinei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10209203/
https://www.ncbi.nlm.nih.gov/pubmed/37225712
http://dx.doi.org/10.1038/s41598-023-34375-6
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author Clara Gonçalves Fernandes, Ana
Ribeiro Valadares, Nermy
Henrique Oliveira Rodrigues, Clóvis
Aguiar Alves, Rayane
Lorena Melucio Guedes, Lis
Luiz Mendes Athayde, André
Mistico Azevedo, Alcinei
author_facet Clara Gonçalves Fernandes, Ana
Ribeiro Valadares, Nermy
Henrique Oliveira Rodrigues, Clóvis
Aguiar Alves, Rayane
Lorena Melucio Guedes, Lis
Luiz Mendes Athayde, André
Mistico Azevedo, Alcinei
author_sort Clara Gonçalves Fernandes, Ana
collection PubMed
description The objective was to verify whether convolutional neural networks can help sweet potato phenotyping for qualitative traits. We evaluated 16 families of sweet potato half-sibs in a randomized block design with four replications. We obtained the images at the plant level and used the ExpImage package of the R software to reduce the resolution and individualize one root per image. We grouped them according to their classifications regarding shape, peel color, and damage caused by insects. 600 roots of each class were destined for training the networks, while the rest was used to verify the quality of the fit. We used the python language on the Google Colab platform and the Keras library, considering the VGG-16, Inception-v3, ResNet-50, InceptionResNetV2, and EfficientNetB3 architectures. The InceptionResNetV2 architecture stood out with high accuracy in classifying individuals according to shape, insect damage, and peel color. Image analysis associated with deep learning may help develop applications used by rural producers and improve sweet potatoes, reducing subjectivity, labor, time, and financial resources in phenotyping.
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spelling pubmed-102092032023-05-26 Convolutional neural networks in the qualitative improvement of sweet potato roots Clara Gonçalves Fernandes, Ana Ribeiro Valadares, Nermy Henrique Oliveira Rodrigues, Clóvis Aguiar Alves, Rayane Lorena Melucio Guedes, Lis Luiz Mendes Athayde, André Mistico Azevedo, Alcinei Sci Rep Article The objective was to verify whether convolutional neural networks can help sweet potato phenotyping for qualitative traits. We evaluated 16 families of sweet potato half-sibs in a randomized block design with four replications. We obtained the images at the plant level and used the ExpImage package of the R software to reduce the resolution and individualize one root per image. We grouped them according to their classifications regarding shape, peel color, and damage caused by insects. 600 roots of each class were destined for training the networks, while the rest was used to verify the quality of the fit. We used the python language on the Google Colab platform and the Keras library, considering the VGG-16, Inception-v3, ResNet-50, InceptionResNetV2, and EfficientNetB3 architectures. The InceptionResNetV2 architecture stood out with high accuracy in classifying individuals according to shape, insect damage, and peel color. Image analysis associated with deep learning may help develop applications used by rural producers and improve sweet potatoes, reducing subjectivity, labor, time, and financial resources in phenotyping. Nature Publishing Group UK 2023-05-24 /pmc/articles/PMC10209203/ /pubmed/37225712 http://dx.doi.org/10.1038/s41598-023-34375-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Clara Gonçalves Fernandes, Ana
Ribeiro Valadares, Nermy
Henrique Oliveira Rodrigues, Clóvis
Aguiar Alves, Rayane
Lorena Melucio Guedes, Lis
Luiz Mendes Athayde, André
Mistico Azevedo, Alcinei
Convolutional neural networks in the qualitative improvement of sweet potato roots
title Convolutional neural networks in the qualitative improvement of sweet potato roots
title_full Convolutional neural networks in the qualitative improvement of sweet potato roots
title_fullStr Convolutional neural networks in the qualitative improvement of sweet potato roots
title_full_unstemmed Convolutional neural networks in the qualitative improvement of sweet potato roots
title_short Convolutional neural networks in the qualitative improvement of sweet potato roots
title_sort convolutional neural networks in the qualitative improvement of sweet potato roots
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10209203/
https://www.ncbi.nlm.nih.gov/pubmed/37225712
http://dx.doi.org/10.1038/s41598-023-34375-6
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