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An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells

Biological tissue information of the lung, such as cells and proteins, can be obtained from bronchoalveolar lavage fluid (BALF), through which it can be used as a complement to lung biopsy pathology. BALF cells can be confused with each other due to the similarity of their characteristics and differ...

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Autores principales: Wu, Puzhen, Weng, Han, Luo, Wenting, Zhan, Yi, Xiong, Lixia, Zhang, Hongyan, Yan, Hai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10209489/
https://www.ncbi.nlm.nih.gov/pubmed/37249972
http://dx.doi.org/10.1016/j.csbj.2023.05.008
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author Wu, Puzhen
Weng, Han
Luo, Wenting
Zhan, Yi
Xiong, Lixia
Zhang, Hongyan
Yan, Hai
author_facet Wu, Puzhen
Weng, Han
Luo, Wenting
Zhan, Yi
Xiong, Lixia
Zhang, Hongyan
Yan, Hai
author_sort Wu, Puzhen
collection PubMed
description Biological tissue information of the lung, such as cells and proteins, can be obtained from bronchoalveolar lavage fluid (BALF), through which it can be used as a complement to lung biopsy pathology. BALF cells can be confused with each other due to the similarity of their characteristics and differences in the way sections are handled or viewed. This poses a great challenge for cell detection. In this paper, An Improved Yolov5s Based on Transformer Backbone Network for Detection and Classification of BALF Cells is proposed, focusing on the detection of four types of cells in BALF: macrophages, lymphocytes, neutrophils and eosinophils. The network is mainly based on the Yolov5s network and uses Swin Transformer V2 technology in the backbone network to improve cell detection accuracy by obtaining global information; the C3Ghost module (a variant of the Convolutional Neural Network architecture) is used in the neck network to reduce the number of parameters during feature channel fusion and to improve feature expression performance. In addition, embedding intersection over union Loss (EIoU_Loss) was used as a bounding box regression loss function to speed up the bounding box regression rate, resulting in higher accuracy of the algorithm. The experiments showed that our model could achieve mAP of 81.29% and Recall of 80.47%. Compared to the original Yolov5s, the mAP has improved by 3.3% and Recall by 3.67%. We also compared it with Yolov7 and the newly launched Yolov8s. mAP improved by 0.02% and 2.36% over Yolov7 and Yolov8s respectively, while the FPS of our model was higher than both of them, achieving a balance of efficiency and accuracy, further demonstrating the superiority of our model.
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spelling pubmed-102094892023-05-26 An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells Wu, Puzhen Weng, Han Luo, Wenting Zhan, Yi Xiong, Lixia Zhang, Hongyan Yan, Hai Comput Struct Biotechnol J Research Article Biological tissue information of the lung, such as cells and proteins, can be obtained from bronchoalveolar lavage fluid (BALF), through which it can be used as a complement to lung biopsy pathology. BALF cells can be confused with each other due to the similarity of their characteristics and differences in the way sections are handled or viewed. This poses a great challenge for cell detection. In this paper, An Improved Yolov5s Based on Transformer Backbone Network for Detection and Classification of BALF Cells is proposed, focusing on the detection of four types of cells in BALF: macrophages, lymphocytes, neutrophils and eosinophils. The network is mainly based on the Yolov5s network and uses Swin Transformer V2 technology in the backbone network to improve cell detection accuracy by obtaining global information; the C3Ghost module (a variant of the Convolutional Neural Network architecture) is used in the neck network to reduce the number of parameters during feature channel fusion and to improve feature expression performance. In addition, embedding intersection over union Loss (EIoU_Loss) was used as a bounding box regression loss function to speed up the bounding box regression rate, resulting in higher accuracy of the algorithm. The experiments showed that our model could achieve mAP of 81.29% and Recall of 80.47%. Compared to the original Yolov5s, the mAP has improved by 3.3% and Recall by 3.67%. We also compared it with Yolov7 and the newly launched Yolov8s. mAP improved by 0.02% and 2.36% over Yolov7 and Yolov8s respectively, while the FPS of our model was higher than both of them, achieving a balance of efficiency and accuracy, further demonstrating the superiority of our model. Research Network of Computational and Structural Biotechnology 2023-05-06 /pmc/articles/PMC10209489/ /pubmed/37249972 http://dx.doi.org/10.1016/j.csbj.2023.05.008 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Wu, Puzhen
Weng, Han
Luo, Wenting
Zhan, Yi
Xiong, Lixia
Zhang, Hongyan
Yan, Hai
An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells
title An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells
title_full An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells
title_fullStr An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells
title_full_unstemmed An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells
title_short An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells
title_sort improved yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10209489/
https://www.ncbi.nlm.nih.gov/pubmed/37249972
http://dx.doi.org/10.1016/j.csbj.2023.05.008
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