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CIGAF—a database and interactive platform for insect-associated trichomycete fungi
Trichomycete fungi are gut symbionts of arthropods living in aquatic habitats. The lack of a central platform with accessible collection records and associated ecological metadata has limited ecological investigations of trichomycetes. We present CIGAF (short for Collections of Insect Gut–Associated...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10211464/ https://www.ncbi.nlm.nih.gov/pubmed/37221042 http://dx.doi.org/10.1093/database/baad038 |
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author | Chaudhary, Shalini Wu, Yibing Strongman, Doug Wang, Yan |
author_facet | Chaudhary, Shalini Wu, Yibing Strongman, Doug Wang, Yan |
author_sort | Chaudhary, Shalini |
collection | PubMed |
description | Trichomycete fungi are gut symbionts of arthropods living in aquatic habitats. The lack of a central platform with accessible collection records and associated ecological metadata has limited ecological investigations of trichomycetes. We present CIGAF (short for Collections of Insect Gut–Associated Fungi), a trichomycetes-focused digital database with interactive visualization functions enabled by the R Shiny web application. CIGAF curated 3120 collection records of trichomycetes across the globe, spanning from 1929 to 2022. CIGAF allows the exploration of nearly 100 years of field collection data through the web interface, including primary published data such as insect host information, collection site coordinates, descriptions and date of collection. When possible, specimen records are supplemented with climatic measures at collection sites. As a central platform of field collection records, multiple interactive tools allow users to analyze and plot data at various levels. CIGAF provides a comprehensive resource hub to the research community for further studies in mycology, entomology, symbiosis and biogeography. |
format | Online Article Text |
id | pubmed-10211464 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102114642023-05-26 CIGAF—a database and interactive platform for insect-associated trichomycete fungi Chaudhary, Shalini Wu, Yibing Strongman, Doug Wang, Yan Database (Oxford) Database Tool Trichomycete fungi are gut symbionts of arthropods living in aquatic habitats. The lack of a central platform with accessible collection records and associated ecological metadata has limited ecological investigations of trichomycetes. We present CIGAF (short for Collections of Insect Gut–Associated Fungi), a trichomycetes-focused digital database with interactive visualization functions enabled by the R Shiny web application. CIGAF curated 3120 collection records of trichomycetes across the globe, spanning from 1929 to 2022. CIGAF allows the exploration of nearly 100 years of field collection data through the web interface, including primary published data such as insect host information, collection site coordinates, descriptions and date of collection. When possible, specimen records are supplemented with climatic measures at collection sites. As a central platform of field collection records, multiple interactive tools allow users to analyze and plot data at various levels. CIGAF provides a comprehensive resource hub to the research community for further studies in mycology, entomology, symbiosis and biogeography. Oxford University Press 2023-05-23 /pmc/articles/PMC10211464/ /pubmed/37221042 http://dx.doi.org/10.1093/database/baad038 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Tool Chaudhary, Shalini Wu, Yibing Strongman, Doug Wang, Yan CIGAF—a database and interactive platform for insect-associated trichomycete fungi |
title | CIGAF—a database and interactive platform for insect-associated trichomycete fungi |
title_full | CIGAF—a database and interactive platform for insect-associated trichomycete fungi |
title_fullStr | CIGAF—a database and interactive platform for insect-associated trichomycete fungi |
title_full_unstemmed | CIGAF—a database and interactive platform for insect-associated trichomycete fungi |
title_short | CIGAF—a database and interactive platform for insect-associated trichomycete fungi |
title_sort | cigaf—a database and interactive platform for insect-associated trichomycete fungi |
topic | Database Tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10211464/ https://www.ncbi.nlm.nih.gov/pubmed/37221042 http://dx.doi.org/10.1093/database/baad038 |
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